Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02861 ATGGTGTTTCATTCTCAAGTTCCTGCTAGATATACTTGTAGGCTTCTTGCAATTCCCTGCGGGAGTGTTCCTGAAAATAAATTCAAGAAGGATAATCCAGAGGATCAGCAGAGATATCCTTTTCCACAATTAAATTCTTCTGGGCGTTTGGAGGTCCAGGTTTTGTCCAATCCTAGTAAAGATCAGTTTTGTAGGGTTATTGAATCGTATAGACCAAACATTGTTTACTTACAAGGGGAAGAACTCGAGAATGATGAAGTTGGTTCTTTAGTATGGGGAGATGTTGATTTGTCCACCGTAGAAGCGATAAGTGGGCTCTTTAGTTATCCATTGCCCACCACTGTATATTTGGAAATAGCAAAGGGAGATGAAGTAGCTGATGCACTTCACTCCAAGGGTATTCCTTATGTTATATACTGGAGAAGCACATTTTCTTGTTATGCAGCATGTCATTTCCGTAATGCATTCCTTTCGGTTCTTCAGAGTTCATCTGCTCACACATGGGATGCATTTCAACTTGCACATGCTTCATTTAGGATGTATTGCTTGGGAAACAACCTTGTTCTTCCTAACAGTAGTCATGAAGAAGTTAGTGAAGATCTGGGTCCACATCTTCTAGGGGAACGCTTGAAAATAAATATCGAACCCCTTGAGAAAGAGGCAGCTGATGATGAAGAAAGTTCATCGGAAATTCCTTCTGTGAGCATACTTGATAATGATGTTGAAATGAGATTTCTCATATGTGGAGAACCAGGCTCATTGGATGCTTATGTATTAGGAGCTCTGGAGGATGGTCTTAACGCTCTCTTGGACATTGAAGTAAATTCGGGGGAGCAAACTTCACGGCAAGTTCAGGTGCTTTGTGCCCCTCCTCCACCTCTTCAGGCAGGAACACTCTCTAATGGTGTTGTGACCATGCGCTGTGATATATCGACATGCAGTTTTGCCCACATCTCACTATTGGTGTCAGGTAGTGCACAAGCTTGTTTTGATGATCAGCTATTTGAGAATTATATAAAGAATGAGATTATAGACAGAGGCGAACTAGTGCAGACACTAATCGGCAGTGAAGGAACCAAACACTTATCTGAGCCACGGAAATCTGTTTCAATTGCTTGTGGGGCAACAGTTTTTGAAGTTAGCATGAAGGTCCCTTCATGGGCATCTCAGATTTTGAGGCAGTTAGCCCCTGATGTTTCTTATCGAAGTTTAGTGGGACTGGGCATTGCCAGCATCCAGGGTTTGTCTGTTGCTTCTTTTGAGAAGGATGATGCTGAACGCCTCCTTTTCTTCTGTTCAAGGAAGGAAAAAGATTTATTTCTGAGCAATTTAACCGATAGCACACTCCCAAGCTGGTTGAAACCACCTGCTCCTAGAAAGAGATCGAAATACATGAAAGATACAAGCCTTGATTCTCATGATGTTATTGAACATCTGAAGGTTTCGTCTGGTAGCAGAATAGATAGTGTGAACGTGGAAATAGGACCAAGGAATGGTTTTAGCACTCCCATGTTTCCATTCCCAAGAAGGAGAGGCATGAAAATTGCTGCAATGAGGCCCATTCCTCATGTTAATCGCCATAAAATGATCTCTTTTCATGGAATAGCTGAGACAGGTGGGCACAATGGAAGCCTGGTTAAAGCTAGTGTTCCTTCTAGTAATCCCATAAAGCATGTGACTGTAGGTTCAGCTTCAGTTTTGCAACAAAAAATGTTTTCAAGTGCATCTCAATATAAACAAATCATTCCCATGAATCCACTACCTTTGAAGAAGCACGGTTGTGGCAGAAGCCCTATACAGGCTTGCTTTGAGGAGGAATTTTTGAAGGATTTGCTGCAGTTTTTAGCTCTTCGAGGTCACAATCGACTTATTCCTCCAGGCGGGCTTGCCGAGTTTCCAGATGCTATACTCAATGGAAAGCGTCTTGACCTTTACAACCTGTACAAGGAGGTGGTTTCAAGAGGTGGCTTTCGTGTTGGAAATGGCATTAACTGGAAAGGACAGATCTTCTCAAAGATGCGCAATTACACCATGACCAATAGAATGACTGGTGTCGGAAACACGCTTAAAAGACATTACGAGACTTATCTTCTAGAGTATGAATTGGCACATGAAGATGTAGATGGTGAATGTTGCCTGTTGTGTCACAGTAGTGCAGCGGGGGACTGGGTGAACTGTGGCATTTGCGGCGAGTGGGCTCACTTTGGTTGTGACAGAAGGCAGGGTCTCGGCGCATTTAAGGATTATGCAAAAACTGATGGATTAGAATACATATGTCCACACTGTAGTGTTGCTAATTTTAAGAAGAAGAAAGTTGCAAATGGATTGTCTCCAGGCTTCACCTCAAGACCAATATGA 2358 42.54 MVFHSQVPARYTCRLLAIPCGSVPENKFKKDNPEDQQRYPFPQLNSSGRLEVQVLSNPSKDQFCRVIESYRPNIVYLQGEELENDEVGSLVWGDVDLSTVEAISGLFSYPLPTTVYLEIAKGDEVADALHSKGIPYVIYWRSTFSCYAACHFRNAFLSVLQSSSAHTWDAFQLAHASFRMYCLGNNLVLPNSSHEEVSEDLGPHLLGERLKINIEPLEKEAADDEESSSEIPSVSILDNDVEMRFLICGEPGSLDAYVLGALEDGLNALLDIEVNSGEQTSRQVQVLCAPPPPLQAGTLSNGVVTMRCDISTCSFAHISLLVSGSAQACFDDQLFENYIKNEIIDRGELVQTLIGSEGTKHLSEPRKSVSIACGATVFEVSMKVPSWASQILRQLAPDVSYRSLVGLGIASIQGLSVASFEKDDAERLLFFCSRKEKDLFLSNLTDSTLPSWLKPPAPRKRSKYMKDTSLDSHDVIEHLKVSSGSRIDSVNVEIGPRNGFSTPMFPFPRRRGMKIAAMRPIPHVNRHKMISFHGIAETGGHNGSLVKASVPSSNPIKHVTVGSASVLQQKMFSSASQYKQIIPMNPLPLKKHGCGRSPIQACFEEEFLKDLLQFLALRGHNRLIPPGGLAEFPDAILNGKRLDLYNLYKEVVSRGGFRVGNGINWKGQIFSKMRNYTMTNRMTGVGNTLKRHYETYLLEYELAHEDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVANFKKKKVANGLSPGFTSRPI 785
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34818953 34824805 + Lsi02G028610.1 Lsi02g02861 657603

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02861 785 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 705 767 IPR013083 -
Lsi02g02861 785 SMART ARID_2 598 701 - -
Lsi02g02861 785 SUPERFAMILY FYVE/PHD zinc finger 697 765 IPR011011 -
Lsi02g02861 785 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 774 - -
Lsi02g02861 785 SMART bright_3 602 706 IPR001606 GO:0003677
Lsi02g02861 785 Gene3D - 599 704 IPR036431 GO:0003677
Lsi02g02861 785 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 774 IPR042293 -
Lsi02g02861 785 CDD PHD_ARID4_like 711 762 - -
Lsi02g02861 785 CDD ARID 604 701 - -
Lsi02g02861 785 Pfam ARID/BRIGHT DNA binding domain 605 701 IPR001606 GO:0003677
Lsi02g02861 785 ProSiteProfiles ARID domain profile. 601 705 IPR001606 GO:0003677
Lsi02g02861 785 SUPERFAMILY ARID-like 604 716 IPR036431 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02861 - - - csv:101214243 1442.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02861 Lsi-Chr2:34818953 Lsi07g00647 Lsi-Chr7:6887838 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g26 . Blo06g00765 . Bda10g00889 . Bpe10g00717 Bma10g00669 . . Cmo17g00636 . . . Car14g01069 . Cpe12g00555 . Bhi01g02835 . . . . . . . . . . . . . . . Cone7ag1258 . Lsi02g02861 Csa07g02313 . Cme01g02766 Blo07g00805 . Bda05g00623 . Bpe03g00693 . . . Sed04g2378 Cmo01g00019 . . Cma17g00656 . Car17g00618 . . Bhi09g00271 Tan06g0071 Cmetu01g1064 . Hepe03g1390 . . Cla09g00122 Cam09g0131 Cec09g0134 Cco09g0135 Clacu09g0138 . Cre09g0123 . Csa03g02792 Chy01g02133 Cme04g01382
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi04g01784 . 16 301 ARID Transcription Factor Family AT1G76110 63.8 4.0e-103 371.7
Lsi07g00647 . 1 783 ARID Transcription Factor Family AT3G43240 58.4 8.4e-263 903.3
Lsi02g02861 . 2 775 ARID Transcription Factor Family AT3G43240 57.1 8.2e-258 886.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001323 3 5 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 9 3 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24931 PF01388 ARID 2.50E-15 CL0123 Lsi TR