Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02861 ATGGTGTTTCATTCTCAAGTTCCTGCTAGATATACTTGTAGGCTTCTTGCAATTCCCTGCGGGAGTGTTCCTGAAAATAAATTCAAGAAGGATAATCCAGAGGATCAGCAGAGATATCCTTTTCCACAATTAAATTCTTCTGGGCGTTTGGAGGTCCAGGTTTTGTCCAATCCTAGTAAAGATCAGTTTTGTAGGGTTATTGAATCGTATAGACCAAACATTGTTTACTTACAAGGGGAAGAACTCGAGAATGATGAAGTTGGTTCTTTAGTATGGGGAGATGTTGATTTGTCCACCGTAGAAGCGATAAGTGGGCTCTTTAGTTATCCATTGCCCACCACTGTATATTTGGAAATAGCAAAGGGAGATGAAGTAGCTGATGCACTTCACTCCAAGGGTATTCCTTATGTTATATACTGGAGAAGCACATTTTCTTGTTATGCAGCATGTCATTTCCGTAATGCATTCCTTTCGGTTCTTCAGAGTTCATCTGCTCACACATGGGATGCATTTCAACTTGCACATGCTTCATTTAGGATGTATTGCTTGGGAAACAACCTTGTTCTTCCTAACAGTAGTCATGAAGAAGTTAGTGAAGATCTGGGTCCACATCTTCTAGGGGAACGCTTGAAAATAAATATCGAACCCCTTGAGAAAGAGGCAGCTGATGATGAAGAAAGTTCATCGGAAATTCCTTCTGTGAGCATACTTGATAATGATGTTGAAATGAGATTTCTCATATGTGGAGAACCAGGCTCATTGGATGCTTATGTATTAGGAGCTCTGGAGGATGGTCTTAACGCTCTCTTGGACATTGAAGTAAATTCGGGGGAGCAAACTTCACGGCAAGTTCAGGTGCTTTGTGCCCCTCCTCCACCTCTTCAGGCAGGAACACTCTCTAATGGTGTTGTGACCATGCGCTGTGATATATCGACATGCAGTTTTGCCCACATCTCACTATTGGTGTCAGGTAGTGCACAAGCTTGTTTTGATGATCAGCTATTTGAGAATTATATAAAGAATGAGATTATAGACAGAGGCGAACTAGTGCAGACACTAATCGGCAGTGAAGGAACCAAACACTTATCTGAGCCACGGAAATCTGTTTCAATTGCTTGTGGGGCAACAGTTTTTGAAGTTAGCATGAAGGTCCCTTCATGGGCATCTCAGATTTTGAGGCAGTTAGCCCCTGATGTTTCTTATCGAAGTTTAGTGGGACTGGGCATTGCCAGCATCCAGGGTTTGTCTGTTGCTTCTTTTGAGAAGGATGATGCTGAACGCCTCCTTTTCTTCTGTTCAAGGAAGGAAAAAGATTTATTTCTGAGCAATTTAACCGATAGCACACTCCCAAGCTGGTTGAAACCACCTGCTCCTAGAAAGAGATCGAAATACATGAAAGATACAAGCCTTGATTCTCATGATGTTATTGAACATCTGAAGGTTTCGTCTGGTAGCAGAATAGATAGTGTGAACGTGGAAATAGGACCAAGGAATGGTTTTAGCACTCCCATGTTTCCATTCCCAAGAAGGAGAGGCATGAAAATTGCTGCAATGAGGCCCATTCCTCATGTTAATCGCCATAAAATGATCTCTTTTCATGGAATAGCTGAGACAGGTGGGCACAATGGAAGCCTGGTTAAAGCTAGTGTTCCTTCTAGTAATCCCATAAAGCATGTGACTGTAGGTTCAGCTTCAGTTTTGCAACAAAAAATGTTTTCAAGTGCATCTCAATATAAACAAATCATTCCCATGAATCCACTACCTTTGAAGAAGCACGGTTGTGGCAGAAGCCCTATACAGGCTTGCTTTGAGGAGGAATTTTTGAAGGATTTGCTGCAGTTTTTAGCTCTTCGAGGTCACAATCGACTTATTCCTCCAGGCGGGCTTGCCGAGTTTCCAGATGCTATACTCAATGGAAAGCGTCTTGACCTTTACAACCTGTACAAGGAGGTGGTTTCAAGAGGTGGCTTTCGTGTTGGAAATGGCATTAACTGGAAAGGACAGATCTTCTCAAAGATGCGCAATTACACCATGACCAATAGAATGACTGGTGTCGGAAACACGCTTAAAAGACATTACGAGACTTATCTTCTAGAGTATGAATTGGCACATGAAGATGTAGATGGTGAATGTTGCCTGTTGTGTCACAGTAGTGCAGCGGGGGACTGGGTGAACTGTGGCATTTGCGGCGAGTGGGCTCACTTTGGTTGTGACAGAAGGCAGGGTCTCGGCGCATTTAAGGATTATGCAAAAACTGATGGATTAGAATACATATGTCCACACTGTAGTGTTGCTAATTTTAAGAAGAAGAAAGTTGCAAATGGATTGTCTCCAGGCTTCACCTCAAGACCAATATGA 2358 42.54 MVFHSQVPARYTCRLLAIPCGSVPENKFKKDNPEDQQRYPFPQLNSSGRLEVQVLSNPSKDQFCRVIESYRPNIVYLQGEELENDEVGSLVWGDVDLSTVEAISGLFSYPLPTTVYLEIAKGDEVADALHSKGIPYVIYWRSTFSCYAACHFRNAFLSVLQSSSAHTWDAFQLAHASFRMYCLGNNLVLPNSSHEEVSEDLGPHLLGERLKINIEPLEKEAADDEESSSEIPSVSILDNDVEMRFLICGEPGSLDAYVLGALEDGLNALLDIEVNSGEQTSRQVQVLCAPPPPLQAGTLSNGVVTMRCDISTCSFAHISLLVSGSAQACFDDQLFENYIKNEIIDRGELVQTLIGSEGTKHLSEPRKSVSIACGATVFEVSMKVPSWASQILRQLAPDVSYRSLVGLGIASIQGLSVASFEKDDAERLLFFCSRKEKDLFLSNLTDSTLPSWLKPPAPRKRSKYMKDTSLDSHDVIEHLKVSSGSRIDSVNVEIGPRNGFSTPMFPFPRRRGMKIAAMRPIPHVNRHKMISFHGIAETGGHNGSLVKASVPSSNPIKHVTVGSASVLQQKMFSSASQYKQIIPMNPLPLKKHGCGRSPIQACFEEEFLKDLLQFLALRGHNRLIPPGGLAEFPDAILNGKRLDLYNLYKEVVSRGGFRVGNGINWKGQIFSKMRNYTMTNRMTGVGNTLKRHYETYLLEYELAHEDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVANFKKKKVANGLSPGFTSRPI 785
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34818953 34824805 + Lsi02G028610.1 Lsi02g02861 657603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02861 785 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 705 767 IPR013083 -
Lsi02g02861 785 SMART ARID_2 598 701 - -
Lsi02g02861 785 SUPERFAMILY FYVE/PHD zinc finger 697 765 IPR011011 -
Lsi02g02861 785 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 774 - -
Lsi02g02861 785 SMART bright_3 602 706 IPR001606 GO:0003677
Lsi02g02861 785 Gene3D - 599 704 IPR036431 GO:0003677
Lsi02g02861 785 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 774 IPR042293 -
Lsi02g02861 785 CDD PHD_ARID4_like 711 762 - -
Lsi02g02861 785 CDD ARID 604 701 - -
Lsi02g02861 785 Pfam ARID/BRIGHT DNA binding domain 605 701 IPR001606 GO:0003677
Lsi02g02861 785 ProSiteProfiles ARID domain profile. 601 705 IPR001606 GO:0003677
Lsi02g02861 785 SUPERFAMILY ARID-like 604 716 IPR036431 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02861 Lsi-Chr2:34818953 Lsi07g00647 Lsi-Chr7:6887838 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24931 PF01388 ARID 2.50E-15 CL0123 Lsi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02861 - - csv:101214243 1442.94