Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02892 ATGGCGAATTTCCATCTCTGTTCTTCACTTTTCTTCTTCTTCATCCTCTGTTTCGTCCCTGTAATTTTCTCACGATCGCCGGATAATCAAGAGACATTCATCGTTCATGTCTCTAAATCGGAGAAGCCTTCTCTATTCTCCTCTCATAATCACTGGCACTCTTCCATTCTCGAATCACTCTCTCCTTCTCCTCATCCGACGAAGCTTCTTTACAGCTACGAACGTGCCGTTAATGGCTTCTCCGCAAGCATCACGGCTGCGCAGGCGGCGGAGCTGCGTCATGTTCCCGGTGTTATTTCGGTGATTCCTGATCGGATCCGTCAGCTTCATACGACTCGGACGCCTCATTTCTTGGGTCTGGCGGATAACCTAGGGCTTTGGGCTGACACGAATTATGCCGAAGATGTGATTATTGGCGTTCTTGACACCGGAATTTGGCCGGAGAGGCCGAGTTTCTCCGACGAGGGTTTGTCTCCGGTTCCGGCAAGCTGGAAAGGTACCTGCGAGACTGGGGAGGGATTTTCGGCTTCGGCCTGTAATCGGAAGATTATTGGTGCGAGAGCGTACTTTTACGGATACGAGTCTAATTTAGGAAGATCGCTTCGTTCTTCGGATTTCAAATCTGCTAGGGATACGGATGGCCATGGAACTCACACGGCCTCTACGGCTGCAGGTTCGTTCGTAAAGAATGCTAGTTTTTTCCAATATGCTCGTGGAGAAGCCAGAGGCATGGCGAGTAGAGCTCGTATCGCTGCCTACAAGATCTGCTGGGAATATGGTTGTTTCGATTCTGACATACTCGCCGCTATGGATCAGGCGATTGCCGATGGGGTCCACATCATCTCTCTCTCAGTCGGATCCTCGGGCCGTGCGCCTGCGTACTATCGAGATTCAATTGCAATCGGAGCGTTTGGCGCAATGCAGCACGGCGTCGTCGTCTCTTGCTCCGCCGGTAATTCCGGTCCTGGTTCTTACACGGCTGTGAACATTGCTCCTTGGATCCTCACCGTCGGTGCCTCCACAATAGACAGGGAGTTTCTTGCCGATGTCATTCTCGGAGACGGTAGGGTTTTCAGCGGCGTGTCGCTCTACTCCGGCGAACCTCTTGGCGATTCCAAGCTTCCGTTGGTCTACGGTGGAGATTGCGGTAGCAGGTATTGTTATTCTGGATCCCTCGATTCATCGAAAGTCGCCGGAAAAATTGTCGTATGCGATCGAGGAGGGAACGCTAGAGTCGCCAAAGGAAGCGCAGTGAAATCCGCCGGCGGTCTTGGTATGGTACTCGCCAATACGGAGGAAAACGGCGAAGAGCTCTTAGCAGATTCTCATCTTATTCCTGGAACAATGGTCGGCGAAATCGCCGGCAACAAGCTTAGAAACTACACCCATTCGGATCCGAATCCAACTGCTACAATCGTGTTTCGCGGAACTGTCATCGGCAATTCGCCTTCAGCTCCGAGAGTCGCCGCCTTCTCTAGCCGCGGTCCGAACTACCGGACGGCGGAGATTCTAAAACCAGATGTTATAGCTCCGGGAGTTAACATTTTGGCCGGCTGGAGTGGCTACAGCAGTCCGACCAGTCTAAGCATCGATCCTCGAAGAGTCGAGTTCAATATCATCTCCGGAACCTCAATGTCTTGCCCTCACGTCAGTGGCGTCGCCGCCTTGCTCCGAAAGGCTTTTCCAACGTGGTCACCGGCTGCAATCAAATCTGCTCTGATCACTACTTCTTACTCTTTGGACAGTTCCGGCAGCCCAATCAAAGATCTCTCCACAAGCAAAGAATCAAATCCATTCGTCCATGGCGCCGGCCATATCGATCCCAACAAAGCTCTGAACCCAGGCCTGATTTATGATCTCACTCCTCAAGACTACGTTTCATTTCTCTGCTCAATCGGTTACGATTCTAGACAAATAGCCGTTTTCGTGAAGGATTCTTCATACTCCCAACTATGTGAGCACAAACTGAGCAATCCCGGCAACCTGAACTACCCATCATTTGCTGTCGTGTTCGACGACGAGGAGGTGGTGAAATATACAAGAACAGTGACAAATGTTGGAGATGAAACTGATGCTGTTTATGAAGTGAAAGTAGAATCCCCACAAGGCGTTGAAATCAGTGTTGTTCCAAACAAGCTGGAGTTCAATGAAAAGAAGACAACACAGTCTTATGAGATTACATTCACCAAAATCAGTGGATTCAAGGAATTAGCAAGCTTCGGATCAATTCAATGGAGTGATGGAAGCCACAATGTTAGGAGTCCAATTGCTGTCTCGTTTAACACTGGATCCATAGCTTCGATGTAA 2307 50.07 MANFHLCSSLFFFFILCFVPVIFSRSPDNQETFIVHVSKSEKPSLFSSHNHWHSSILESLSPSPHPTKLLYSYERAVNGFSASITAAQAAELRHVPGVISVIPDRIRQLHTTRTPHFLGLADNLGLWADTNYAEDVIIGVLDTGIWPERPSFSDEGLSPVPASWKGTCETGEGFSASACNRKIIGARAYFYGYESNLGRSLRSSDFKSARDTDGHGTHTASTAAGSFVKNASFFQYARGEARGMASRARIAAYKICWEYGCFDSDILAAMDQAIADGVHIISLSVGSSGRAPAYYRDSIAIGAFGAMQHGVVVSCSAGNSGPGSYTAVNIAPWILTVGASTIDREFLADVILGDGRVFSGVSLYSGEPLGDSKLPLVYGGDCGSRYCYSGSLDSSKVAGKIVVCDRGGNARVAKGSAVKSAGGLGMVLANTEENGEELLADSHLIPGTMVGEIAGNKLRNYTHSDPNPTATIVFRGTVIGNSPSAPRVAAFSSRGPNYRTAEILKPDVIAPGVNILAGWSGYSSPTSLSIDPRRVEFNIISGTSMSCPHVSGVAALLRKAFPTWSPAAIKSALITTSYSLDSSGSPIKDLSTSKESNPFVHGAGHIDPNKALNPGLIYDLTPQDYVSFLCSIGYDSRQIAVFVKDSSYSQLCEHKLSNPGNLNYPSFAVVFDDEEVVKYTRTVTNVGDETDAVYEVKVESPQGVEISVVPNKLEFNEKKTTQSYEITFTKISGFKELASFGSIQWSDGSHNVRSPIAVSFNTGSIASM 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35145004 35147310 + Lsi02G028920.1 Lsi02g02892 657634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02892 768 SUPERFAMILY Subtilisin-like 109 616 IPR036852 GO:0004252|GO:0006508
Lsi02g02892 768 CDD PA_subtilisin_like 349 472 - -
Lsi02g02892 768 PRINTS Subtilisin serine protease family (S8) signature 133 152 IPR015500 -
Lsi02g02892 768 PRINTS Subtilisin serine protease family (S8) signature 211 224 IPR015500 -
Lsi02g02892 768 PRINTS Subtilisin serine protease family (S8) signature 541 557 IPR015500 -
Lsi02g02892 768 Gene3D - 629 761 - -
Lsi02g02892 768 SUPERFAMILY PA domain 363 463 IPR046450 -
Lsi02g02892 768 ProSiteProfiles Serine proteases, subtilase domain profile. 108 612 - -
Lsi02g02892 768 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 20 762 IPR045051 -
Lsi02g02892 768 Pfam Subtilase family 134 581 IPR000209 GO:0006508|GO:0008236
Lsi02g02892 768 Pfam PA domain 374 458 IPR003137 -
Lsi02g02892 768 CDD Peptidases_S8_3 108 578 IPR034197 -
Lsi02g02892 768 Gene3D - 343 480 - -
Lsi02g02892 768 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.6 20 762 - -
Lsi02g02892 768 Pfam Fibronectin type-III domain 661 758 IPR041469 -
Lsi02g02892 768 Gene3D Peptidase S8/S53 domain 135 625 IPR036852 GO:0004252|GO:0006508
Lsi02g02892 768 ProSitePatterns Serine proteases, subtilase family, serine active site. 542 552 IPR023828 -
Lsi02g02892 768 Pfam Peptidase inhibitor I9 32 110 IPR010259 -
Lsi02g02892 768 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 22 110 IPR037045 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02892 Lsi-Chr2:35145004 Lsi05g01289 Lsi-Chr5:20693666 0 dispersed
Lsi03g00104 Lsi-Chr3:1444235 Lsi02g02892 Lsi-Chr2:35145004 2.27E-48 transposed
Lsi07g00238 Lsi-Chr7:2631138 Lsi02g02892 Lsi-Chr2:35145004 2.17E-155 transposed
Lsi09g00086 Lsi-Chr9:764376 Lsi02g02892 Lsi-Chr2:35145004 1.77E-18 transposed
Lsi11g01327 Lsi-Chr11:21876001 Lsi02g02892 Lsi-Chr2:35145004 1.45E-128 transposed
Lsi02g02892 Lsi-Chr2:35145004 Lsi06g00340 Lsi-Chr6:3784647 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02892 - - csv:101205194 1394.79