Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02913 ATGTTGTTTTTCTTTTTTCCTTTTCCCTTTTTCGACTCTATTTCGTCTCCAGAAGGACGAGCAGGAAGAAGACGGCCATGGATGGAGGTGGCGCAGTGCACAATCGCTCAGTGGAAGATGTTTTCAGTGATTTTAGGGGAAGAAGAAACGGCGTCATCAAAGCCCTCACCGACATGGAATGAAACCACCCGTGATGCAAATTCATTCTATGTTTTTGCTGTTTTCATGGCTTTAATAATGTTGAAGAGTTCTATCAACAATGTGATCCTGTTTAGAACTCCCTTCTTAGCTATGTATATTGGTCATTTGGTGCTTACAGAGAAGGAAAATCTATGCTTGTATGGCTTTCCAAATGAAGTATGGGAAGTTAATTTACCTGCTGAAGAAGTACCTCCAGAACTTCCAGAGCCAGCGTTGGGTATTAATTTTGCAAGAGATGGCATGCAAGAAAGGGATTGGTTGGCTTTGGTTGCTGTCCATAGTGATTCTTGGTTGCTCTCTGTTGCCTACTATTTTGGGGCAAGATTTGGATTTGATAAAACTGATAGGAGGCGGCTTTTCAATATGATAAATGATTTGCCAACTGTATTTGAAGTAGTCACAGGTATTGCAAAGAAACAAGTCAAGGAAAAGTCATCAAGTGCTAATGGTAGCAAATCCAAGTCAAGCTTTAAAACGAGGGAAGCTGAAATGCAAGGGATGTATGCTAGGCAGCCGCAGGCAAGGGAAGAGGTAGAGACGTTGTATGAAGAAGATGAAGACGAGCACGGTGACACCTTGTGTGGGGCATGTGGTGAGAATTATGCTTCAGATGAATTTTGGATTTGCTGTGATATCTGTGAGAAATGGTTCCATGGGAAGTGTGTTAGAATAACTCCTGCAAAAGCCGAGCACATTAAGCAGTACAAATGCCCATCCTGCAGCAACAAGAGAAGCCGCATTTAA 945 42.33 MLFFFFPFPFFDSISSPEGRAGRRRPWMEVAQCTIAQWKMFSVILGEEETASSKPSPTWNETTRDANSFYVFAVFMALIMLKSSINNVILFRTPFLAMYIGHLVLTEKENLCLYGFPNEVWEVNLPAEEVPPELPEPALGINFARDGMQERDWLALVAVHSDSWLLSVAYYFGARFGFDKTDRRRLFNMINDLPTVFEVVTGIAKKQVKEKSSSANGSKSKSSFKTREAEMQGMYARQPQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCVRITPAKAEHIKQYKCPSCSNKRSRI 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35346170 35348724 + Lsi02G029130.1 Lsi02g02913 657655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02913 314 Pfam PHD-finger 261 310 IPR019787 -
Lsi02g02913 314 ProSitePatterns Zinc finger PHD-type signature. 261 307 IPR019786 -
Lsi02g02913 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 309 IPR013083 -
Lsi02g02913 314 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 106 313 - -
Lsi02g02913 314 PANTHER CPG BINDING PROTEIN 106 313 IPR045104 GO:0006355|GO:0042393
Lsi02g02913 314 SUPERFAMILY FYVE/PHD zinc finger 250 312 IPR011011 -
Lsi02g02913 314 SMART PHD_3 260 308 IPR001965 -
Lsi02g02913 314 ProSiteProfiles Zinc finger PHD-type profile. 258 310 IPR019787 -
Lsi02g02913 314 CDD PHD_AL_plant 260 310 IPR044104 -
Lsi02g02913 314 Pfam Alfin 107 202 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02913 Lsi-Chr2:35346170 Lsi03g02216 Lsi-Chr3:33171653 1.79E-80 dispersed
Lsi05g00769 Lsi-Chr5:10818138 Lsi02g02913 Lsi-Chr2:35346170 3.20E-100 transposed
Lsi08g00842 Lsi-Chr8:16868547 Lsi02g02913 Lsi-Chr2:35346170 9.75E-65 transposed
Lsi11g00171 Lsi-Chr11:1805696 Lsi02g02913 Lsi-Chr2:35346170 1.39E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24938 PF12165 Alfin 3.70E-49 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02913 - - csv:101222322 416.001