Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02914 ATGGCGCCCTTGGAGAAGGTGGCGAAGATGAATCTAGGTGCGGCGGAGGAAGAATCGCCGCAGGAGATTCATATTCCGGCCGAAATCGATTGGCAAATGCTCGATAAATCTAAATTCTTCTTTCTCGGTGCAGCGTTGTTTTCAGGTGTTTCGGCTTCTCTTTACCCTATGGTGGTATTGAAAACTCGGCAACAGGTTGCTCATTCGCAGCTTTCGTGCATCAGAACTGCATTTTCGCTTGTCCGCCATGAAGGTTTTCGAGCTCTCTACCGAGGATTTGGAACTTCTCTAATGGGGACTATCCCTGCTAGAGCTTTGTACATGGGAGCTCTTGAGATTACAAAGAGCTATGTCGGAACTGCCACCATTAAAGTGGGATTTCCAGAGACTACTGCAGCTACCATTGCTAACGCAGCTGCTGGATTGAGTGCTGCAATGGCAGCTCAGCTTGTATGGACTCCTGTTGATGTTGTGAGTCAAAGACTCATGGTTCAACCTAGCTACAACAATCCCAATTCTTCCTCAACTCATTACATCAATGGAATCGATGCATTTCGAAAGATCCTCAATGCCGATGGCCCCCGAGGCCTTTACCGAGGATTCGGGATATCGATTTTGACCTACGCACCTTCGAATGCTGTGTGGTGGGCTTCTTATTATGTAGCTCAGCGGCTGGTTTGGGGTGGAATTGGTTGTTCTTATTATGCAAAGAAAGTTGATGAAGGCAATGAAAATGGAGGTTGTAGTAATGTCTACAAACCCGATTCCAAGACTGTGATTGCGGTTCAGGGGGCAAGCGCAGCAATGGCAGGGAGTATATCAGCTTTGATAACAATGCCACTTGATACAATCAAGACAAGATTGCAAGTTTTGGATGGGGATGAAAATGGGAGAAGAGGGCCAACTATAGGACAGACATTGAGGAATTTGGTAAGGGAAGGAGGGTGGACGGCATGTTACCGAGGTTTGGCGCCGCGATGTGCGTCGATGTCGATGTCTGCAACAACGATGATCACTACATATGAGTTTTTGAAGCGGCTATCAACAAAGAATCAAGAGAGTTTAACAAGCTAA 1074 46.74 MAPLEKVAKMNLGAAEEESPQEIHIPAEIDWQMLDKSKFFFLGAALFSGVSASLYPMVVLKTRQQVAHSQLSCIRTAFSLVRHEGFRALYRGFGTSLMGTIPARALYMGALEITKSYVGTATIKVGFPETTAATIANAAAGLSAAMAAQLVWTPVDVVSQRLMVQPSYNNPNSSSTHYINGIDAFRKILNADGPRGLYRGFGISILTYAPSNAVWWASYYVAQRLVWGGIGCSYYAKKVDEGNENGGCSNVYKPDSKTVIAVQGASAAMAGSISALITMPLDTIKTRLQVLDGDENGRRGPTIGQTLRNLVREGGWTACYRGLAPRCASMSMSATTMITTYEFLKRLSTKNQESLTS 357
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 35350355 35351515 - Lsi02G029140.1 Lsi02g02914 657656
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02914 357 Pfam Mitochondrial carrier protein 47 118 IPR018108 -
Lsi02g02914 357 Pfam Mitochondrial carrier protein 262 351 IPR018108 -
Lsi02g02914 357 Pfam Mitochondrial carrier protein 134 226 IPR018108 -
Lsi02g02914 357 ProSiteProfiles Solute carrier (Solcar) repeat profile. 35 117 IPR018108 -
Lsi02g02914 357 SUPERFAMILY Mitochondrial carrier 32 344 IPR023395 -
Lsi02g02914 357 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 10 354 - -
Lsi02g02914 357 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER-LIKE PROTEIN 10 354 - -
Lsi02g02914 357 PRINTS Mitochondrial carrier protein signature 141 163 IPR002067 GO:0055085
Lsi02g02914 357 PRINTS Mitochondrial carrier protein signature 90 108 IPR002067 GO:0055085
Lsi02g02914 357 ProSiteProfiles Solute carrier (Solcar) repeat profile. 258 347 IPR018108 -
Lsi02g02914 357 ProSiteProfiles Solute carrier (Solcar) repeat profile. 132 225 IPR018108 -
Lsi02g02914 357 Gene3D Mitochondrial carrier domain 39 356 IPR023395 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02914 Lsi-Chr2:35350355 Lsi03g00181 Lsi-Chr3:2374026 7.31E-83 dispersed
Lsi05g01397 Lsi-Chr5:21810658 Lsi02g02914 Lsi-Chr2:35350355 1.21E-68 transposed
Lsi02g02914 Lsi-Chr2:35350355 Lsi04g01400 Lsi-Chr4:21784232 4.20E-173 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02914 K15121 - csv:101210602 624.009