Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02921 ATGGCAGGTTTAGCTCCAGAAGGGACCCAGTTTGATTCTCGCCAATATGATGCTAAAATGAATGAGATTCTTTCGGCAGAAGGCCAGGAATTTTTTACTTCATATGATGAAGTTTATGAAAGTTTTGATTCGATGGGGCTGCAAGAAAACCTCCTTAGAGGCATTTATGCCTATGGTTTTGAGAAACCATCTGCAATTCAGCAAAGAGGTATTGTTCCTTTCTGCAAAGGCCTAGATGTGATTCAGCAGGCTCAATCTGGAACTGGGAAGACTGCAACCTTTTGCTCTGGGATACTTCAGCAACTTGATTATGGTCTAATCCAGTGCCAGGCGTTAGTTTTGGCGCCGACTAGGGAGCTGGCTCAACAAATTGAGAAGGTTATGAGAGCTCTTGGAGATTATCTTGGTGTTAAGGTTCATGCTTGTGTAGGAGGGACAAGTGTCCGTGAAGATCAACGCATTCTTCAAGCTGGTGTTCACGTAGTAGTTGGAACACCTGGTCGTGTGTTTGACATGTTAAGGAGGCAGTCTCTTCGCCCAGATTGTATTAAGATGTTTGTATTGGATGAAGCTGATGAAATGCTTTCTCGAGGTTTCAAAGATCAGATCTATGACATTTTCCAGCTGTTGCCGTCAAAAATTCAAGTTGGGGTATTCTCAGCCACAATGCCACCGGAAGCTTTGGAGATCACGAGGAAATTCATGAACAAGCCTGTCAGAATCTTGGTAAAACGTGATGAGCTTACTTTGGAGGGTATCAAACAATTTTACGTAAATGTTGATAAGGAAGATTGGAAGCTTGAAACTCTTTGTGATCTCTACGAGACTCTGGCTATCACTCAAAGTGTTATCTTTGTTAACACACGTCGCAAGGTCGATTGGCTTACAGACAAAATGAGAAGCCGAGACCATACCGTATCAGCCACCCATGGTGACATGGACCAGAACACTCGAGATATTATCATGCGTGAATTTCGATCTGGCTCGTCTCGTGTTCTTATCACAACTGACTTATTAGCTCGTGGTATTGATGTTCAGCAAGTGTCCCTGGTCATAAATTATGATTTGCCAACCCAACCAGAAAATTACCTTCATCGAATTGGGCGAAGTGGGCGTTTTGGAAGAAAGGGTGTTGCCATCAATTTTGTTACAAATGATGATGAGAGAATGCTTTTTGATATTCAGAAGTTCTATAATGTGGTCATCGAGGAGCTGCCAGCCAATGTTGCAGATCTCCTATGA 1242 42.83 MAGLAPEGTQFDSRQYDAKMNEILSAEGQEFFTSYDEVYESFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTNDDERMLFDIQKFYNVVIEELPANVADLL 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35428963 35430669 + Lsi02G029210.1 Lsi02g02921 657663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02921 413 Gene3D - 249 413 IPR027417 -
Lsi02g02921 413 CDD DEADc_EIF4A 45 242 - -
Lsi02g02921 413 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 252 413 IPR001650 -
Lsi02g02921 413 PANTHER EUKARYOTIC INITIATION FACTOR 4A-2 23 413 - -
Lsi02g02921 413 PANTHER RNA HELICASE 23 413 - -
Lsi02g02921 413 CDD SF2_C_DEAD 253 383 - -
Lsi02g02921 413 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 187 195 IPR000629 -
Lsi02g02921 413 Gene3D - 30 248 IPR027417 -
Lsi02g02921 413 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724
Lsi02g02921 413 SMART ultradead3 59 256 IPR014001 -
Lsi02g02921 413 SMART helicmild6 293 374 IPR001650 -
Lsi02g02921 413 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 241 IPR014001 -
Lsi02g02921 413 Pfam DEAD/DEAH box helicase 65 226 IPR011545 GO:0003676|GO:0005524
Lsi02g02921 413 Pfam Helicase conserved C-terminal domain 266 374 IPR001650 -
Lsi02g02921 413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 394 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02921 Lsi-Chr2:35428963 Lsi05g02028 Lsi-Chr5:27272239 7.05E-90 dispersed
Lsi03g01162 Lsi-Chr3:21973492 Lsi02g02921 Lsi-Chr2:35428963 2.47E-179 transposed
Lsi03g01960 Lsi-Chr3:31019511 Lsi02g02921 Lsi-Chr2:35428963 3.33E-65 transposed
Lsi02g02921 Lsi-Chr2:35428963 Lsi07g00592 Lsi-Chr7:6285937 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02921 K03257 - csv:101221456 818.92