Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02923 ATGAAAATCGAGTCGATGAGACGGGGAAGAATAAGGGAGAGGATCCGCCGAAGCCATCTCTATACGTTCGCTTGCCTTCGGGCAGACAGCGCACGGGAGGTTGACGATTCAAATCCTTTAACAGGACCTGGCTTCTCGCGAACTGTCTGTTGTAATCAACCTGAACAACATGAGAGAAAGCCATTGAAATACTGCTCGAATTACATATCCACGACCAAGTATAATGTTCTTTCTTTCTTGCCTAAGGCTCTCTTTGAGCAATTCCGGAGGGTTGCCAATTTGTACTTTCTTTTGGCTGCATTGTTATCGCTCACACCAGTTGCCCCATTTTCTGCCATGAGCATGATTGCTCCTTTGGTATTTGTTGTTGGGCTCAGTATGGCTAAAGAAGCTCTTGAGGACTGGCGTCGATTTGTGCAGGATATGAAGGTTAATCTCAGGAAAGTGTGTGTTCACAAAGGGGAAGGTGTTTTTGGTTATAGACCATGGCACAAGATTCGAGTAGGAGATATACTGAAAGTAGAGAAGGATCAGTTCTTTCCAGCCGATCTGCTTCTCTTGTCATCGTGCTATGAGGACGGTATATGTTATGTGGAAACAATGAATTTGGATGGCGAGACTAATCTCAAAGTAAAGAGATCTTTGGAAGTAACCTTACCGTTGGATGATGATGCAACTTTCAAAGATTTTTCTGGAAAAATTTACTGTGAAGATCCAAACCCGAATCTTTACACCTTTGTAGGTAACTTTGAGTATGATCGGCAGATTTATCCTCTTGATCCTAATCAGATTCTCCTCAGAGATTCAAAATTGAGGAATACAGCTTATGCCTATGGGGTGGTGATATTTACTGGACATGATAGCAAAGTCATGCAGAATGCTACAAAATCCCCTTCGAAAAGAAGTAGAATAGAGAGGAAAATGGACAAAATTATTTACATCCTTTTTACTCTCCTTATATTGATCTCATCAATAAGCTCAATAGGTTTTGCTGTGAAAACAAAGTACCAAATGACAGACTGGTGGTATTTACGAACTACTGGTGATGATCATGACCCACTGTACAACCCTCGTAAGCCAACCTTATCAGGGCTCATACATTTAATCACTGCTCTTATACTTTATGGATATTTGATACCCATCTCGTTATATGTTTCCATCGAGGTGGTTAAGGTTCTGCAAGCTTCCTTCATTAACCAAGATATTAACATGTATTGTGAGGAGACTGGCAATCCAGCTCGAGCTCGAACTTCAAATTTGAATGAGGAGTTGGGTCAGGTAGACACAATCCTATCTGACAAAACAGGCACTTTGACTTGCAATCAGATGGACTTTCTGAAATGTTCCATTGCTGGCACTGCATATGGTGTTAAATCTAGTGAGGTGGAACTTGCAGCTGCAAGGCAGATGGCATATGATTTTGAGGAGCAGGACGGAGAATATTCCGATGTCCAGGGGCAGAAGAATAGCCAACAGCCATCGATGCCAAATAGCAGAGTAGGGTCCGAGATCGAACTGGAGACTGTTATTACTTCAAGTGATGGCAAGGATCAGAAGTCTGCCATAAAGTATTTTAGTTTTGAGGATAGCCGCCTAACAGGTGGAAACTGGTTGAATGAGCCCAATCATGATGTTCTTCTATTATTCTTCCGAATTTTAGGGATTTGTCACACTGCAATTCCCGAGCTGAATGAGGAGACTGGTGTTTATACATATGAGGCAGAGTCCCCGGATGAAGGTGCTTTTCTTGTTGCAGCAAGAGAATTTGGTTTTGAATTTTGTAAGAGAACACAATCAACCTTGGTTGTCCGTGAAAGATATCCTTCACCTGACCAAGTAGTTGAAAGGGAATACAAAATTTTGAATCTTTTGGATTTCACAAGCAAGAGAAAGAGAATGTCTGTAATTATTAGGGACGAGGAGGGCCATATTATTCTTCTCTGCAAAGGTGCTGATAGCATCATCTTCGATCGACTATCAAAGAATGGAAGAATGTACGAGGAAGCAACCACAAGGCATTTGAATGAATATGGAGAAGCAGGGCTGCGAACTCTGGCACTTGCTTATAGGAGGCTTGAGGAGGCCGAATATAATGCTTGGAACAATGAGTTTCAGAAGGCTAAGACGTCCATTGGAGGAGATAGAGATGCAATGCTCGAGCGAGTATCCGACCTCATGGAGCGAGAATTAATCCTTGTTGGTGCTACTGCTGTGGAGGACAAATTACAGAATGGGGTGCCCCAATGCATAGACAAACTTGCACAAGCTGGTCTTAAGATCTGGGTTCTGACAGGAGATAAGATGGAAACTGCCATCAACATAGGATATGCATGCAGTTTACTACGACAGGGAATGAAGCGGATCTGCATATCAACAAACTCAGATTCCTTAGCACAGGATGGCAAAGAGGCCATGAAAGAAAATATTATGAATCAAATCACCAATGCCTCACAAATGATCAAGCTGGAAAAAGATCCACATGCTGCATTTGCTTTGATCATTGATGGAAAGACTCTAACCTATGCTCTCGAGGATGATATGAAGCTTCAATTCCTTGGACTTGCTGTTGATTGTGCATCGGTCATTTGCTGTAGAGTCTCCCCCAGGCAGAAGGCACTGGTAACAAGGTTAGTGAAAGAAGGTACTGGGAAAACCACTTTAGCAATTGGTGATGGTGCAAACGATGTAGGAATGATTCAAGAGGCCGATATTGGTGTCGGTATCAGTGGGGTTGAAGGTATGCAGGCTGTGATGGCTAGTGATTTCTCTATTGCTCAATTTCGGTTTCTTGAAAGGCTTCTGGTAGTCCATGGTCATTGGTGCTACAAGAGGATAGCACAAATGATTTGCTATTTCTTCTATAAGAATATTGCATTTGGATTAACGCTATTCTACTTCGAAGCATACGCGGGATTTTCTGGGCAATCAATTTATGATGATTTCTACATGTTATCATTTAACGTCATACTCACCTCATTGCCTGTAATTTCCCTTGGAGTTTTTGAGCAAGATGTCTCTTCTGAGTTCCCTGCGCTGTATCAGCAAGGACCCCGAAACTTGTTCTTTGACTGGCCTCGGATTTTCGGATGGATGGGGAACGCTGTCTACTCATCTCTAGTTACTTTCTTCCTCAATCTCATCATCTTCTATGACCAGGCATTCCGCTCAGGCGGCCAAACTGCGGATATGACTGCTGTAGGAACCACCATGTTTACTTGCATCATATGGGCAGTAAATTGCCAGATTGCTCTCACAATGAGCCATTTCACCTGGATCCAACACCTTCTCGTCTGGGGTAGTATCGCCATGTGGTATTTGTTCATCTTACTCTATGGAATGATAATATCCTCTGGGAATGCGTATAAAATCTTTGTTGAAGCACTAGGTCCTGCCCCTGTTTACTGGATAGCCACCATTTTAGTAACAATTACCTGTAATCTCCCATATCTTGCCCACATATCCTTCCAGAGAAGCTTCCATCCAATGGATCATCACATTATCCAAGAAATCAAATATTACAGAAAGGATGTTGAAGATACTCACATGTGGACCAGGGAAAGATCAAAAGCAAGGCAAAAGACCAAGATAGGATTCACAGCCAGAGTAGAAGCAAAGATCAGACAGTTGAAAGGAAGGCTGCAAAAGAAGCACTCTTCCCTTGGTGTGCCTCCAAATGCTGCTACTGCTATATCATGA 3696 42.56 MKIESMRRGRIRERIRRSHLYTFACLRADSAREVDDSNPLTGPGFSRTVCCNQPEQHERKPLKYCSNYISTTKYNVLSFLPKALFEQFRRVANLYFLLAALLSLTPVAPFSAMSMIAPLVFVVGLSMAKEALEDWRRFVQDMKVNLRKVCVHKGEGVFGYRPWHKIRVGDILKVEKDQFFPADLLLLSSCYEDGICYVETMNLDGETNLKVKRSLEVTLPLDDDATFKDFSGKIYCEDPNPNLYTFVGNFEYDRQIYPLDPNQILLRDSKLRNTAYAYGVVIFTGHDSKVMQNATKSPSKRSRIERKMDKIIYILFTLLILISSISSIGFAVKTKYQMTDWWYLRTTGDDHDPLYNPRKPTLSGLIHLITALILYGYLIPISLYVSIEVVKVLQASFINQDINMYCEETGNPARARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTAYGVKSSEVELAAARQMAYDFEEQDGEYSDVQGQKNSQQPSMPNSRVGSEIELETVITSSDGKDQKSAIKYFSFEDSRLTGGNWLNEPNHDVLLLFFRILGICHTAIPELNEETGVYTYEAESPDEGAFLVAAREFGFEFCKRTQSTLVVRERYPSPDQVVEREYKILNLLDFTSKRKRMSVIIRDEEGHIILLCKGADSIIFDRLSKNGRMYEEATTRHLNEYGEAGLRTLALAYRRLEEAEYNAWNNEFQKAKTSIGGDRDAMLERVSDLMERELILVGATAVEDKLQNGVPQCIDKLAQAGLKIWVLTGDKMETAINIGYACSLLRQGMKRICISTNSDSLAQDGKEAMKENIMNQITNASQMIKLEKDPHAAFALIIDGKTLTYALEDDMKLQFLGLAVDCASVICCRVSPRQKALVTRLVKEGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTLFYFEAYAGFSGQSIYDDFYMLSFNVILTSLPVISLGVFEQDVSSEFPALYQQGPRNLFFDWPRIFGWMGNAVYSSLVTFFLNLIIFYDQAFRSGGQTADMTAVGTTMFTCIIWAVNCQIALTMSHFTWIQHLLVWGSIAMWYLFILLYGMIISSGNAYKIFVEALGPAPVYWIATILVTITCNLPYLAHISFQRSFHPMDHHIIQEIKYYRKDVEDTHMWTRERSKARQKTKIGFTARVEAKIRQLKGRLQKKHSSLGVPPNAATAIS 1231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35435123 35441323 - Lsi02G029230.1 Lsi02g02923 657665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02923 1231 SUPERFAMILY Calcium ATPase, transduction domain A 151 294 IPR008250 -
Lsi02g02923 1231 Pfam Phospholipid-translocating P-type ATPase C-terminal 917 1161 IPR032630 -
Lsi02g02923 1231 Pfam Cation transport ATPase (P-type) 556 660 - -
Lsi02g02923 1231 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 6 1223 - -
Lsi02g02923 1231 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 532 696 IPR023299 GO:0000166
Lsi02g02923 1231 MobiDBLite consensus disorder prediction 483 500 - -
Lsi02g02923 1231 Gene3D - 428 442 IPR023214 -
Lsi02g02923 1231 SFLD Haloacid Dehalogenase 415 940 - -
Lsi02g02923 1231 ProSitePatterns E1-E2 ATPases phosphorylation site. 433 439 IPR018303 -
Lsi02g02923 1231 SUPERFAMILY Calcium ATPase, transmembrane domain M 55 1157 IPR023298 -
Lsi02g02923 1231 Gene3D - 124 297 - -
Lsi02g02923 1231 SUPERFAMILY HAD-like 426 934 IPR036412 -
Lsi02g02923 1231 MobiDBLite consensus disorder prediction 478 500 - -
Lsi02g02923 1231 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 861 970 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi02g02923 1231 Pfam Phospholipid-translocating ATPase N-terminal 50 116 IPR032631 -
Lsi02g02923 1231 Gene3D - 443 478 IPR023299 GO:0000166
Lsi02g02923 1231 Gene3D - 595 708 IPR023299 GO:0000166
Lsi02g02923 1231 SFLD p-type atpase 415 940 IPR044492 -
Lsi02g02923 1231 PRINTS P-type cation-transporting ATPase superfamily signature 889 908 - -
Lsi02g02923 1231 PRINTS P-type cation-transporting ATPase superfamily signature 431 445 - -
Lsi02g02923 1231 CDD P-type_ATPase_APLT_Dnf-like 66 1044 - -
Lsi02g02923 1231 Gene3D - 729 929 IPR023214 -
Lsi02g02923 1231 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 6 1223 - -
Lsi02g02923 1231 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 64 1169 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02923 Lsi-Chr2:35435123 Lsi09g01091 Lsi-Chr9:17328856 0 dispersed
Lsi02g02923 Lsi-Chr2:35435123 Lsi04g00308 Lsi-Chr4:3125165 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02923 K01530 - csv:101221220 2350.47