Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02929 ATGAAAGACCCAGATGCGGAAGTGATAGCATTATCGCCGAAGACGTTGATGGCGACGAATAGATTCGTGTGCGAGATATGTAACAAAGGGTTTCAAAGAGATCAGAATCTTCAATTACATAGAAGAGGACACAATTTACCATGGAAATTAAAGGCAAGATCAAATAAAGAAGTAATAAAGAAGAAGGTATATGTTTGTCCAGAAGTGAGTTGTGTTCATCATGATCCATCAAGAGCACTTGGAGATCTAACAGGGATAAAGAAGCACTTCTGTAGAAAGCATGGTGAAAAGAAGTGGAAATGTGATAAGTGCTCTAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAGATCTGTGGCACTAAGGAGTACAGATGTGACTGTGGAACTCTCTTTTCAAGAAGAGATAGTTTCATTACACATAGAGCCTTCTGTGATGCATTAGCAGATGAAAGTGCAAGATCAGCCATGGCATTAAACCCTCTTCTCTCTTCTTACAACAATAATAATAATAATAATTCACAAGAATTCCTTATTAATAATAATAATAATTTTGGTCTTAAACGAGATTTCAACAATAATAACAACGACAATTTGAGAGCGGAGATTCCGCCGTGGCTACAACCATCAGATCTCCGAGCGGAGATGATGATGGGGAGTGGTGGTCAGGACGAGCACTCTCATCAAACCCTAAACCCTAACCCTAACCCAAGCGGACATGGGTGCGGGGCCACTAGCCTTCCTCCTCCGGCATATCAATCGTGTTCTGTTTCTTCTCCTCATATATCAGCGACTGCACTGCTGCAGAAGGCAGCTCAGATGGGTGCGACCATGAGTAGTACCACTACCACGAGTGGCTCTATGCCAAGGCCCCACAAGCTTCTTCACGTGTCTACAGGCAATTTTGGAGAGATAGGATTATGGTCACGTGAAGTTGAGATGGGTAGAGGAGGAGGAGGAGGAGCTGTGAGTTGTAGTAGTAGTAGTTGTACTGATTATGGGAATAAAGTAACCAATGCTTCTGCTTCTGCTTCTGCACCAACCACTTTTCTTCATGACATGATCAATTCCCTCTCTTCTCCTTCTCCTTCTAATCCTTTCATCCAAGATAATCCCTCCTTCAACGACCCCGCCGCCGCCACTTTCGCCACTATGCATCATCACACCGCCCCCATCCCCGTTCCCACCACGGCTGCCACCGCTCTGGGCGGTCGAAACGATGGTTTAACGAGAGATTTCTTGGGACTTCGCCCTCTTTCTCATGGAGATATTCTAAGCCTTACTGGTTTTGGAAATTGCATTGTTCCTAATTCCTCCAATCTTCACAATCAAATCCAGAAGCCATGGCAAGGTTAG 1362 44.13 MKDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKARSNKEVIKKKVYVCPEVSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYRCDCGTLFSRRDSFITHRAFCDALADESARSAMALNPLLSSYNNNNNNNSQEFLINNNNNFGLKRDFNNNNNDNLRAEIPPWLQPSDLRAEMMMGSGGQDEHSHQTLNPNPNPSGHGCGATSLPPPAYQSCSVSSPHISATALLQKAAQMGATMSSTTTTSGSMPRPHKLLHVSTGNFGEIGLWSREVEMGRGGGGGAVSCSSSSCTDYGNKVTNASASASAPTTFLHDMINSLSSPSPSNPFIQDNPSFNDPAAATFATMHHHTAPIPVPTTAATALGGRNDGLTRDFLGLRPLSHGDILSLTGFGNCIVPNSSNLHNQIQKPWQG 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35493922 35497311 + Lsi02G029290.1 Lsi02g02929 657671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02929 453 MobiDBLite consensus disorder prediction 221 247 - -
Lsi02g02929 453 Pfam Zinc finger, C2H2 type 22 44 IPR013087 -
Lsi02g02929 453 Gene3D Classic Zinc Finger 77 156 - -
Lsi02g02929 453 Gene3D Classic Zinc Finger 2 71 - -
Lsi02g02929 453 SMART c2h2final6 99 119 IPR013087 -
Lsi02g02929 453 SMART c2h2final6 64 94 IPR013087 -
Lsi02g02929 453 SMART c2h2final6 22 44 IPR013087 -
Lsi02g02929 453 MobiDBLite consensus disorder prediction 225 243 - -
Lsi02g02929 453 SUPERFAMILY beta-beta-alpha zinc fingers 21 119 IPR036236 -
Lsi02g02929 453 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 3 433 - -
Lsi02g02929 453 ProSiteProfiles Zinc finger C2H2 type domain profile. 22 44 IPR013087 -
Lsi02g02929 453 ProSitePatterns Zinc finger C2H2 type domain signature. 24 44 IPR013087 -
Lsi02g02929 453 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 3 433 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02929 Lsi-Chr2:35493922 Lsi03g02034 Lsi-Chr3:31704220 4.36E-106 dispersed
Lsi02g02929 Lsi-Chr2:35493922 Lsi07g00577 Lsi-Chr7:6115656 2.68E-108 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24939 PF00096 zf-C2H2 0.0045 CL0361 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02929 K25870 - csv:101220200 602.053