Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02933 ATGAGCCCCATCACTCACCGCCAACATTTCTCCAAATCCACCTCCGCCGCCGTCACAACCACCACTTCCTCCACCACCAACACCCAAGCCTGCGCCGCCTGCAAGTACCAACGACGTAAGTGCGCTCCCGATTGCATTCTCGCTCCTTATTTCCCTCACGATCGCCAACGTCAATTCTTAAACGCTCATAAACTATTCGGCGTTAGCAATATCACTAAAATCATTAAAAATCTAGATCCGTTTGAGAAGGAAGAGGCAATGCGTACCATTATTTTTCAATCGGATGTCCGATCTGTCGATCCTGTTGGCGGTTGTTATCGGATTATTCGAGACCTTCAACGTCAAATTGAATATAGCAAGGCGGAGCTTGAGATCGTGCTTCATCAATTGGCTATTTGTAAGCAACAAGCCGCTGCTGCTGCGGCTGCTGCGGCCGCTGCGGCGATTCTCGAGGGGGATCCGATGAGTGGATACGGCGGAATTGAGCATCAATTTGTGGAAGGATATGAAGGGGAAGGGTTTGTAGTTGGGGAAAATGAGAATGGAGAGAGTTTGGACGATCAGGAAGTGGAGGTTTGGGGAATTCAAGATTCGTGTTCTTCCTTGCAATTGAAACAAGCCGGCTCTGTTCATGATTTTCACGATATCAAGATCGATACAAATAATCATCATCATCAACAACTTCTTAAATTTCAACACGATCATCAGCATGATCTGATTCATCAGAGTGAAGAACCTATGCTGAAGATGGACAATGTGATATTGAAAGAAGATTCTGACCCAATGCAACAGGCTCAAGATCAAGAACTTAAAGGTGCAGTAGACACTTTATTTACCTTCCCAGCTTGTGATACTTAG 858 45.69 MSPITHRQHFSKSTSAAVTTTTSSTTNTQACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKNLDPFEKEEAMRTIIFQSDVRSVDPVGGCYRIIRDLQRQIEYSKAELEIVLHQLAICKQQAAAAAAAAAAAAILEGDPMSGYGGIEHQFVEGYEGEGFVVGENENGESLDDQEVEVWGIQDSCSSLQLKQAGSVHDFHDIKIDTNNHHHQQLLKFQHDHQHDLIHQSEEPMLKMDNVILKEDSDPMQQAQDQELKGAVDTLFTFPACDT 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35515390 35517213 + Lsi02G029330.1 Lsi02g02933 657675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02933 285 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 24 245 - -
Lsi02g02933 285 Pfam Lateral organ boundaries (LOB) domain 30 125 IPR004883 -
Lsi02g02933 285 MobiDBLite consensus disorder prediction 1 21 - -
Lsi02g02933 285 ProSiteProfiles LOB domain profile. 29 130 IPR004883 -
Lsi02g02933 285 PANTHER LOB DOMAIN-CONTAINING PROTEIN 22 24 245 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01506 Lsi-Chr2:20946486 Lsi02g02933 Lsi-Chr2:35515390 4.94E-32 dispersed
Lsi02g02933 Lsi-Chr2:35515390 Lsi08g01584 Lsi-Chr8:23868870 2.45E-32 dispersed
Lsi02g02933 Lsi-Chr2:35515390 Lsi03g01359 Lsi-Chr3:24507575 4.96E-29 transposed
Lsi02g02933 Lsi-Chr2:35515390 Lsi06g01582 Lsi-Chr6:26226856 5.65E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24940 PF03195 LOB 9.20E-36 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02933 - - csv:105436286 484.567