Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02938 ATGACAAAAGGGGAGTATTGTATTAGAGTTCTTAAAGCTCTGAGGATTCTTGAGCTTAGTTTTCATTTGATTTATGATTGTATTCCCATCGCTTTTGCAGTACAATTTTGCCCATGTCCCCAATCGCTAAATTGTCTGTTTCTCTCTGATTTCTCTCATTTTCTGAGTGAAGGGAAAAAGAGGAGGGATCTGATGAAAACTGCAGAAATTTCCTTTCAAATTGGGACTCTGATGGGGTTTCGATTACTGTTTCTGCTGTTCCAAATTTGTTTTGCTGTTAGATCTTTCTCTATCTGTGAAGCTGCAGGTAATGGGTTTGGTTTGGTTCTGGAAAAAAATCACTATTCCCCCAGGCAGGACGAGCGGATCGCATTTTGTAATCTCAGAGATAACATAAACAGTAACATTTGCTTTTCTTCTGATGTAGCCATTCAATCAGATGATTCAAGTAGAGCTCCTAGCATTGCACTTCCGCCTACCGCACCTGCGAAGAAATGGGGGCATGAACATACATTCTCACCATTGACCTCTTCTCATAAATTTCGCCATTCAAGAAGGAAGTTCAGAAACAATGCTCCACAACCTACTTATCGTGCATCGCCCCCGACTAGCAGCCAGAAAGGCCCTGCTGCTGTCTCTCCAATTCAGTCACCGTTGCCATCTGTAGTGAGAGGGAGGTCGCCCGGACCTGCGCCATCACCAACGATTCAACCCAACCACTATTATATGCCCATTCCTGCACCTACAACATCTCCTATGGGTTCTTACAAGAAGAAGAAGAGTATGCCACCATCACAAGTTATGATGCTACCACCTCCACCTCCTAATGGGGATTGTACAATAGCATGTACAGAGCCATTGACATATACGCCTCCCGGGACGCCATGTGGCTGCGTGTGGCCAATTCAAGTCAAAATCATTCTTGATGTTGCAGTATACACATTTTTCCCTCTTGTTTCAGAACTTGCAGAGGAAATTGCTGACGGTATCAGTCTGAACCAAAGCCAAGTTCGAATTATGGGAGCTGATGCTGCTAGTCAGCAGTTAGAAAAAACAACTGTCCTCATCAACTTGGTTCCAAAAGGATCAAAATTCAATCATAACACGGCCTTTTTTATATATCAGAAATTTTGGCGGAGAAAGATATCCATCAACCCTTCTTTGTTTGGAAGATATCAAGTACTTAATGTCAAATATCCAGGTTATCTCTTGATCCTTGATCTTTTGGTTTTGAATATTAAAAAATTTCAACACAGAGTGGATGTGGACAACAATACTAATGCTGGAAATGCAATTAAACCACTTGGAGTTGACGTGCCAAGACGAAAAAAAGAAGGGCTTGGCAGAAACATGATCGCGGTTATTACTATATCATCGTTCACTGCCCTTGTCATGTGTGTCGGGCTCGCTTGGCTTTGCCTGTTGAGATGCAGAGTGTCTACACATCAACCAGCACAAATTCCACAAAACTTGATAGCCTCACCTACAAAACCACCAGGCACTGCTGGATTGATAATGGTTGGAAGTGAACCTGGTTCTTCATCCATGCCTCTCGATGCCGATCCAATGACGTATATTGGAGCTGCAAAGAACTTCACCTTGAAAGATATGGAGAAAGCCACTGACAACTTCAATAGTGCAAGAATATTAGGAGAAGGTGGCTTTGGAATTGTTTACAGTGGCAGTTTAGATGATGGAAGGGAAGTGGCTGTGAAGGTTCTTAAACGACATAATCAACATGGTATTCGGGAATTCTTGGCAGAAGTCGAGATGCTGAGCCGTTTACACCATAGAAATCTAGTTAAGTTGATTGGTATCTGTACAGAAGATCAGATTCGCTGCCTGGTATATGAATTGGTTCCTAATGGAAGTGTCGAATCGCATTTACATGGCATTGACAAGTTAACCAGTCCACTTGACTGGGATGCCCGCATGAAGATTGCCCTCGGTGCTGCTCGAGGCCTAGCCTATCTGCATGAAGACTCCAATCCTCGAGTTATTCATCGAGACTTCAAAGCTAGCAACATCTTGTTGGAATATGACTTTACACCAAAAGTTTCAGATTTCGGATTAGCTAGAACTGCACTAGAGGAAGGAAACAAGCACATCTCAACACATGTTATGGGAACTTTTGGTTATCTAGCTCCAGAATATGCAATGACTGGCCACCTTCTTGTAAAGAGCGATGTCTATAGCTATGGTGTTGTCCTTCTTGAGCTACTTACAGGAAGAAAGCCAGTAGACTTGTCGCTTCCACCCGGACAAGAAAATCTCGTTGCTTGGGCTCGTCCACTTCTCACGAGCAAGGAAGGGTTAGATGCAATAACAGACCCAGCTATTAAGCCTGATATCTCCATTGATAGCTTGGCCAGAGTAGCAGCAATTGCTTCTATGTGTGTGCAACCGGAAGTATCTCACAGACCATTTATGGGTGAGGTTGTTCAAGCCCTGAAACTCGTTTGCAATGAGTTCGAAGAAACTAACGATCCAGTTTCAAGAAGTTACAGCCGAGACGAACTTCTAAGTTACATGGACAGTAAATTTGGAGGAATTTCCGGTGAAATACTAAACGCTCCCGAGACCTCGCACACCTTTCCTTCGGGAAAAGAGACAAATGTAGGATTATCGGCATCAGATTTGATTAGTGCATCTGCAAGATTTGAAGGACAGGAACTGGTTTCTTCTAGATGGCATTCATCAAACTCGGAACCATTGAGAACTGGAAGAAAAAAGCACTTATGGCAGAAGGTAAGAAGTTTGTCACGAGGCAGCTTCAGTGAACATGGCTTTTCTGCAAAGTTTTGGCCTGGATTTCGTTAG 2820 43.12 MTKGEYCIRVLKALRILELSFHLIYDCIPIAFAVQFCPCPQSLNCLFLSDFSHFLSEGKKRRDLMKTAEISFQIGTLMGFRLLFLLFQICFAVRSFSICEAAGNGFGLVLEKNHYSPRQDERIAFCNLRDNINSNICFSSDVAIQSDDSSRAPSIALPPTAPAKKWGHEHTFSPLTSSHKFRHSRRKFRNNAPQPTYRASPPTSSQKGPAAVSPIQSPLPSVVRGRSPGPAPSPTIQPNHYYMPIPAPTTSPMGSYKKKKSMPPSQVMMLPPPPPNGDCTIACTEPLTYTPPGTPCGCVWPIQVKIILDVAVYTFFPLVSELAEEIADGISLNQSQVRIMGADAASQQLEKTTVLINLVPKGSKFNHNTAFFIYQKFWRRKISINPSLFGRYQVLNVKYPGYLLILDLLVLNIKKFQHRVDVDNNTNAGNAIKPLGVDVPRRKKEGLGRNMIAVITISSFTALVMCVGLAWLCLLRCRVSTHQPAQIPQNLIASPTKPPGTAGLIMVGSEPGSSSMPLDADPMTYIGAAKNFTLKDMEKATDNFNSARILGEGGFGIVYSGSLDDGREVAVKVLKRHNQHGIREFLAEVEMLSRLHHRNLVKLIGICTEDQIRCLVYELVPNGSVESHLHGIDKLTSPLDWDARMKIALGAARGLAYLHEDSNPRVIHRDFKASNILLEYDFTPKVSDFGLARTALEEGNKHISTHVMGTFGYLAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDLSLPPGQENLVAWARPLLTSKEGLDAITDPAIKPDISIDSLARVAAIASMCVQPEVSHRPFMGEVVQALKLVCNEFEETNDPVSRSYSRDELLSYMDSKFGGISGEILNAPETSHTFPSGKETNVGLSASDLISASARFEGQELVSSRWHSSNSEPLRTGRKKHLWQKVRSLSRGSFSEHGFSAKFWPGFR 939
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35531292 35535829 + Lsi02G029380.1 Lsi02g02938 657680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02938 939 MobiDBLite consensus disorder prediction 225 241 - -
Lsi02g02938 939 SUPERFAMILY Protein kinase-like (PK-like) 524 817 IPR011009 -
Lsi02g02938 939 ProSiteProfiles Protein kinase domain profile. 544 825 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g02938 939 MobiDBLite consensus disorder prediction 150 241 - -
Lsi02g02938 939 CDD STKc_IRAK 550 818 - -
Lsi02g02938 939 Pfam Protein tyrosine and serine/threonine kinase 547 817 IPR001245 GO:0004672|GO:0006468
Lsi02g02938 939 ProSitePatterns Serine/Threonine protein kinases active-site signature. 666 678 IPR008271 GO:0004672|GO:0006468
Lsi02g02938 939 ProSitePatterns Protein kinases ATP-binding region signature. 550 572 IPR017441 GO:0005524
Lsi02g02938 939 MobiDBLite consensus disorder prediction 190 212 - -
Lsi02g02938 939 PANTHER OS01G0750732 PROTEIN 141 938 - -
Lsi02g02938 939 Gene3D Transferase(Phosphotransferase) domain 1 620 839 - -
Lsi02g02938 939 PANTHER OS01G0750732 PROTEIN 141 938 - -
Lsi02g02938 939 Gene3D Phosphorylase Kinase; domain 1 515 619 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02938 Lsi-Chr2:35531292 Lsi05g01067 Lsi-Chr5:18173193 0 dispersed
Lsi03g01118 Lsi-Chr3:21364216 Lsi02g02938 Lsi-Chr2:35531292 1.61E-127 transposed
Lsi02g02938 Lsi-Chr2:35531292 Lsi06g00279 Lsi-Chr6:3176091 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83449 PF07714 PK_Tyr_Ser-Thr 7.90E-47 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02938 - - csv:101219484 1521.52