Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02944 ATGAAATCTTTGTCCAAAATGGACAGTTTATGGGATGTTTTGGTAGTGACAGCCATTTTTTTGACCACCATTATTCTCTATAGGAACTGCTTTAGACTTCTCAGATCAAAATTCTGCAACCAACTCCCTTTGGGCTCTCTTGGCTGGCCTTTCATTGGTGAGACTATTGAGTTCATTTCCTGCGCTTATTCGGACCGTCCCGAAACCTTTATGGATAAGCGTCGCCGCCTGTATGGGAAGGTGTTCAAGTCACATATTTTTGGAAGTCCTACCATTGTTTCTACTGATGCAGAAGTCAGTAAGTTCATTTTGCAGAGTGATGCCAAGGCTTTTGTACCGTCTTATCCGAAATCTTTGACAGAATTGATGGGGAAGTCTTCTATTTTACTGATAAATGGGAGCTTGCAGAAGAGAATTCATGGTCTTGTGGGAGCTTTCTTCAAGTCTTCACATCTCAAAGCTCAAATAACCAAGGATATGGAGTGTTATGTCAAACTATCAATGGCAAATTGGACCGAGAACAATCTTATTTACCTTCAAGATGAAACCAAAAATATTTCCTTTCAAGTATTAGTAAAGATATTGATTAGTTTAAATCCTGGTCAAAGGATGGAGTTTCTCCAGAAACAGTTTCAAGAATTCATAGCTGGGCTTATGGCTTTGCCAGTGAACATACCTGGAAGCAGGCTTTACCAATCCTTGCAGGCAAGTTGGACAGCCAAAAGGAATATGGTCAAATTAGTAAAGAAGATAATACAAGAGAGAAAAAGCTGTGGAATTTCACCTGTCCCAAAAGATGTCATGGAAGTTTTGCTCAAAGATGAAACTGAAGAATTAACAGATGATCTAATAGCAGAGAACATGATTGACATGATGATTCCTGGGGAAGATTCAGTGCCAATCTTAATGACTCTTGCAGAGGAAAACTTGAAGATGAAAGGACTGAAAGAGCAGCTCGGTGAGGTGTTGCATTGGAGCGATTACTTATCGATGCCATTTACGCAGAGTGTGATCACTGAGACACTAAGGATGGGAAACATTATAATTGGGGTGATGCGTAAGGCCATGAAAGACATGAAGATAAAAGGATACCTAATACCTAAGGGTTGGTCAGTTCTTACATACTTCAGATCTGTTCATCTTGATGGCAATAACTATGAATGCCCTTACAAGTTCAATCCATGGAGAGACTTGAGTAATTGTAACTTCACTCCTTTTGGAGGTGGACAAAGACTATGCCCTGGACTTGACTTAGCTAGGCTTGAAGCTTCCATCTTCCTTCACCACTTTGTCACTCACTTCAGGTTTCAACTACTCACCGACAAAGCCTTTTATCCGTCGGTCAGATTCACAGGTTCCAACTTCCACGACCTCTCCGTCGTCTTCCCCAAATTCCCTCTCCAAATTGCCGGAATCTCCGCCGCTCTGATGACCACCTACGGCACGATTCCTACCTCCGCCGCTCCTGGAACCTCCTCGGACCTCGACTTCGTCTCCCGCGGCAAACAGCGTCTCAAAGCCGGCCTCGCCACTCGCGTTCCATGGAGGCTCATGTTCGATTTCCACTCCTTCACTCTCCCTTTCAACTTCCGCGACACGTTCTCTCGCATCAAAACCAACATCGTCTACTTCCGTATGAATTATGTCATTATCGTCCTCTTGATTCTCTTCTTGAGCCTCCTCTGGCATCCGATTTCTCTCATCGTCTTCACCGCCATGCTTGCCGTTTGGTTGTTCCTGTATTTCCTTCGCGACGAGCCTCTGATCCTCTTCGGCCGTTTGATTAACGATCGACTGGTGATGGCTCTGCTCTCGGTCTTCACACTTGTTTTCTTGTTTCTGACCAAAGCGACACTCAATATCCTGTTGTCACTTCTGATCGCTGCTGTGCTGGTGCTGATCCACGCCGCTGTGAGGAAGACGGATGATCTGTTCTTGGATGAAGGAGCTACTACAGTCTACACTTTCGGTTCGGATGCTCCTGGAACTTCAGTTTCCCTTTATTCTTCGTAA 2013 44.26 MKSLSKMDSLWDVLVVTAIFLTTIILYRNCFRLLRSKFCNQLPLGSLGWPFIGETIEFISCAYSDRPETFMDKRRRLYGKVFKSHIFGSPTIVSTDAEVSKFILQSDAKAFVPSYPKSLTELMGKSSILLINGSLQKRIHGLVGAFFKSSHLKAQITKDMECYVKLSMANWTENNLIYLQDETKNISFQVLVKILISLNPGQRMEFLQKQFQEFIAGLMALPVNIPGSRLYQSLQASWTAKRNMVKLVKKIIQERKSCGISPVPKDVMEVLLKDETEELTDDLIAENMIDMMIPGEDSVPILMTLAEENLKMKGLKEQLGEVLHWSDYLSMPFTQSVITETLRMGNIIIGVMRKAMKDMKIKGYLIPKGWSVLTYFRSVHLDGNNYECPYKFNPWRDLSNCNFTPFGGGQRLCPGLDLARLEASIFLHHFVTHFRFQLLTDKAFYPSVRFTGSNFHDLSVVFPKFPLQIAGISAALMTTYGTIPTSAAPGTSSDLDFVSRGKQRLKAGLATRVPWRLMFDFHSFTLPFNFRDTFSRIKTNIVYFRMNYVIIVLLILFLSLLWHPISLIVFTAMLAVWLFLYFLRDEPLILFGRLINDRLVMALLSVFTLVFLFLTKATLNILLSLLIAAVLVLIHAAVRKTDDLFLDEGATTVYTFGSDAPGTSVSLYSS 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35584038 35590784 + Lsi02G029440.1 Lsi02g02944 657686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02944 670 Pfam PRA1 family protein 509 648 IPR004895 -
Lsi02g02944 670 Pfam Cytochrome P450 43 443 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g02944 670 PANTHER 3-EPI-6-DEOXOCATHASTERONE 23-MONOOXYGENASE CYP90D1 20 449 - -
Lsi02g02944 670 PRINTS E-class P450 group I signature 335 353 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g02944 670 PRINTS E-class P450 group I signature 403 413 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g02944 670 PRINTS E-class P450 group I signature 413 436 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g02944 670 PRINTS E-class P450 group I signature 75 94 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g02944 670 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 406 415 IPR017972 GO:0005506|GO:0016705
Lsi02g02944 670 PANTHER CYTOCHROME P450 26 20 449 - -
Lsi02g02944 670 SUPERFAMILY Cytochrome P450 41 454 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g02944 670 Gene3D Cytochrome P450 36 461 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00638 Lsi-Chr1:5136644 Lsi02g02944 Lsi-Chr2:35584038 6.81E-09 dispersed
Lsi02g02944 Lsi-Chr2:35584038 Lsi07g00205 Lsi-Chr7:2230672 2.09E-85 dispersed
Lsi05g00974 Lsi-Chr5:16981086 Lsi02g02944 Lsi-Chr2:35584038 8.90E-37 dispersed
Lsi07g00204 Lsi-Chr7:2221600 Lsi02g02944 Lsi-Chr2:35584038 6.88E-29 dispersed
Lsi11g00435 Lsi-Chr11:4570193 Lsi02g02944 Lsi-Chr2:35584038 9.87E-42 dispersed
Lsi09g01533 Lsi-Chr9:23449532 Lsi02g02944 Lsi-Chr2:35584038 7.49E-50 transposed
Lsi09g01780 Lsi-Chr9:26553886 Lsi02g02944 Lsi-Chr2:35584038 3.31E-53 transposed
Lsi02g02944 Lsi-Chr2:35584038 Lsi06g00271 Lsi-Chr6:3061952 1.81E-40 wgd
Lsi02g02944 Lsi-Chr2:35584038 Lsi07g00564 Lsi-Chr7:5994952 2.76E-127 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02944 K12638 - csv:101217830 1135.55