Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02960 ATGGATAAACCAGATAAGTCGCCAAAAACTGACATAAGCAATGGCCATTTTCTTCCTCTTGTCGCAGTTTCTTCATCATTTTCCAAATTAAGAAAGGGTTGGTTAGTGTCATGCCAGAATGTACAAAAGGAGTTTAAATTGCTGAAGGAAAGTTTGCAACTTTTATTCTCCTATTCAAAAAGCTTCAAACAAGATCAGTATTTTTCGTTTTTCGCCATCGGTTTGGGATTTGAATTGATAATGGATCATTTGAATTGGAATGGTTATGGATCAAGAGTTGCGACGAAGACGACGAGGTCGGTGTCATCCGCGTCGTTTTGGAGCAATTACCAACAAGGAGTTGAAGAAAGGTTCATGATATCCAACTCAAATAATTCCAACTTCTTCAACTCAGTTCAAGACCTACCAATTAAAGAAGCTGCAACTTGTTCAACTCTGGTTTCAAAAACAGGGGAAGCTTTGGTTATGAGTCCTCCATTGACAAGCTTTACAACATCTAGCAACATGGATGTTATTGGCCTTGAATCACAGCTCCTCACCAGCTTCAACGGCGACAAATCGGCGGCAGTAACGGCGTGCTCTCTCGAGTCGTTGGACTGTTTGCTTTCAGCTACAAACAGCAACACAGATACATCAGTTGAAGATGATGGATCAGTTTCAATGATGTTAACAGATTACACCAATTTATGGAACTTTGGAGGCAATGCAGCAGCATCTTCAAAAGAATCTGAAAAGAATGGCTCAAATTCTACAAAGAGAAGCCATGACCAAACTCATTTCAAAGCTGCAGATTACTCTATTTTCTCAAATAACATCATAAATCTATCTGATTCCACTTCAGACAGTGGAGGATTTAGGATCATAACAGATCAGAATCTGCCAAAACAGAAGAAACCCAGATCAGAAAAGCCACCAAGTTCATCAAACATCAATTTTCAACAATCATGTTCATCAGGATCTTCTTGTATTGATCAAGAGCCTGATCCAGAGGCCATTGCACAAATGAAAGAGATGATCTACAGAGCAGCAGCTTTCAGGCCAGTGAATTTGGGGTTAGAAATGATAGAAAAGCCCAAAAGGAAGAATGTGAGAATTTCAACAGACCCACAAACTGTAGCAGCAAGGCAAAGGAGAGAGAGAATCAGTGAGAGAATTAGGGTTTTGCAAAGGCTTGTTCCTGGTGGAAGCAAAATGGATACAGCATCAATGCTTGATGAAGCTGCAAATTATCTCAAGTTCTTGAAGTCTCAGATCAAAGCCCTAGAGAATCTTGGGCAAAAGCTTGAGTCTTTGAATTGTCCTCCAACTAGCATAGCTTTCTCTTTCAACCCATCTTTTCCCATACAAACATCATCATCATCCTCCCATAATAATTTCACACTCCAAAATCCCAACCATCTTATTAGCCAATTTCCCCAAAACTAA 1425 39.79 MDKPDKSPKTDISNGHFLPLVAVSSSFSKLRKGWLVSCQNVQKEFKLLKESLQLLFSYSKSFKQDQYFSFFAIGLGFELIMDHLNWNGYGSRVATKTTRSVSSASFWSNYQQGVEERFMISNSNNSNFFNSVQDLPIKEAATCSTLVSKTGEALVMSPPLTSFTTSSNMDVIGLESQLLTSFNGDKSAAVTACSLESLDCLLSATNSNTDTSVEDDGSVSMMLTDYTNLWNFGGNAAASSKESEKNGSNSTKRSHDQTHFKAADYSIFSNNIINLSDSTSDSGGFRIITDQNLPKQKKPRSEKPPSSSNINFQQSCSSGSSCIDQEPDPEAIAQMKEMIYRAAAFRPVNLGLEMIEKPKRKNVRISTDPQTVAARQRRERISERIRVLQRLVPGGSKMDTASMLDEAANYLKFLKSQIKALENLGQKLESLNCPPTSIAFSFNPSFPIQTSSSSSHNNFTLQNPNHLISQFPQN 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35730450 35734958 + Lsi02G029600.1 Lsi02g02960 657702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02960 474 Gene3D - 370 433 IPR036638 GO:0046983
Lsi02g02960 474 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 365 414 IPR011598 GO:0046983
Lsi02g02960 474 Pfam Helix-loop-helix DNA-binding domain 375 414 IPR011598 GO:0046983
Lsi02g02960 474 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 101 466 IPR045843 GO:0003700|GO:0006355
Lsi02g02960 474 Coils Coil 404 431 - -
Lsi02g02960 474 MobiDBLite consensus disorder prediction 303 324 - -
Lsi02g02960 474 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 370 430 IPR036638 GO:0046983
Lsi02g02960 474 MobiDBLite consensus disorder prediction 284 326 - -
Lsi02g02960 474 PANTHER TRANSCRIPTION FACTOR BHLH87 101 466 - -
Lsi02g02960 474 MobiDBLite consensus disorder prediction 237 256 - -
Lsi02g02960 474 SMART finulus 371 420 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02960 Lsi-Chr2:35730450 Lsi10g00560 Lsi-Chr10:8215560 1.93E-39 dispersed
Lsi02g02960 Lsi-Chr2:35730450 Lsi07g00548 Lsi-Chr7:5815783 1.49E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24941 PF00010 HLH 9.30E-06 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02960 - - csv:101207907 660.218