Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02969 ATGAATGGCCTAGCTTTTCTCAATCTTGTTCAAGCTCAAGGTCAATTAGGCTTCATAAGCTTAGATTGTGGATTGCCACCAAACACAAACTACATTGAACCAACAACAACACTTCAATTTACTTCTGATGCTGCTTATATAAACAGTGGTGAAAGCAAAAGTTTATCCTCTAATTATAACGAATATCTACAGCGACAATATCATCATCTTAGAAGCTTTCCCCAAGGTCGTAGGAATTGCTACAATATAAGTGTAAAACAGAATACAAAATATTTGATGCGAGCAAGTTTTTTCTATGGAAATTACGATGGGCTCAGCCAACTGCCGAAATTCAATCTCTACTTTGGAGATAGCTTATGGAAGACGGTAAATTTTACTGATGAAAACACAGATACCACAATCGATTCCATACATGTAACCTCAGACAATCAAGTACAAATTTGTCTTGTCAACACAGACACTGGAACTCCATTCATCTCTTCATTGGAATTCAGACCTTTGCCAAATGAGACTTATAAGTTCTTGACAAGATCGTTGTTGCTTTACTATCGATTAGATATGGGTACAACAACGAATAAAACATACAGGTTTCCTAGTGATATATATGATCGATTTTGGTCGCCTTTCAATTGGTATGAGTGGACAAGCATAAGTACCGCACTTATGATAGATTCAACTGATAATAATTACTACCAGCCAGGATCTGCTGTAATGGAAACTGCAGCTATTAGAATAGATACAAAAAAGCCTATGGAAATTTGGTGGGAGCCTGAAGATGAAAACACCCAGTATTATGTATACATGCACTTTGCTGAAGTTGAAAATCTCCAAGGCAATCAAAGCAGAGGATTCAACGAATTTGTCATCGAGTGGATTGACAGGAGAGATTTCTCAAAGTATAGAGAATCTACGAATGCTACAAATATTGTAAGTAAATGGTTAGATGTATTAAACCCTACCCCGATTGGAACTACTTTAGAGATTAACCAGGACTTGTCAAATAATGGCTTGACGGGAAATATCCCAGATTTTCTGTCTAACTTGTCAAACCTTGAAGTCTTAAAGTTAGATAACAACAAGCTTACAGGCTCTGTTCCAACTGAACTCGTTAAGAGACTCAATAATGGTTCATTATCGTTAAGTGTTCAAGGGAATCCAAATCTAGATTGTATATCAGATTCGTGCAAGAGTAAGAAGACTAGTGTTGTTATTCCAATTGTAGCATCAATTGGCGGAGTGATAGTCATCATTGTAGTTTCAATCATCATCCTTTGGATTGTTAAATCAAGGAAGAAACGACAAAATGAAACCGTTGTTCCAAAGGTGGATCCCTCAGGAACCAATGACCAACTAAGTGATCAGTTGTTGGAGACAAGGAGGCGGCAGTTCACATATTCAGAAGTCTTGAGGATGACCAACAATTTCGAGAGAATTCTAGGAAAAGGAGGTTTTGGGATGGTTTATTATGGCACCATAAATGACACTCAAGTGGCCGTGAAGATGCTATCTCAGGCTTCAGGTCAAGGTTATCAACAGTTTCAAGCAGAGGTTACACTTCTTTTGAGAGTTCACCATAAAAACTTGACAAGTCTTGTGGGGCTCCGGATAGCTATGGATGCAGCACAAGGATTGGAGTACCTACACGATGGTTGCAAGCCACCCATAATCCACAGAGATGTGAAAACAACAAACATCTTATTGACAGAGAATTTCCAAGCCAAACTTGCAGATTTTGGTTTATCCAAAAGCTTCCCAGTAGATGGCAACAAAACTAACAACTACATGTCCACCATTGTTGCTGGCACCCCTGGTTACCTTGATCCAGACTACTACTTATCGAACAGGCTGACGGAGAAAAGCGATGTGTACAGCTTTGGAGTGGCTCTGTTGGAGATAATCAGCTGCAGACCTGTGATATCAAGAAGTGAAGAAAACGTTCATATCAGTAAATGGGTAAACTCGATGGTAGCACAAGGGGACATAAATGGAATAGTTGACGAAAGATTGAGAGGAAAATATGGTGCTAACTCAGTTTGGAAGGCAGTGGAGGTGGCGTTGAGTTGTGTATCTGGGAACTCTGGAAGAAGACCGACGATGAACCATGTGGTGGCGGAACTGAAGAGTTGTTTGGCCATGGAATTGGAACGGACGCCGGAGAGTCAAGGTTTCGATTCGATGAATTCCGTCAAAATGATGTCCATTGTTATGGATTACAGTGAATCCGCTCCAATGGCGAGTTCAAGTTATGAGATGCGCAGAAAACAGACCCAAGAAGATGAAGACTATGGAATTGTCAGGGCTCCATTCCCTCTTTGGTTTTCTGCTATTCTAACTCTTCAACTTCTTGTTCAAGCCCAGGATCAGTCAGGCTTCATAAGTTTAGACTGTGGAACACCAGAGAGTACGAGTTACACCGAAACAACGACCAAGATCAACTATGTTTCTGATGCACCCTACATAAACAGTGGTGTAAGTGGAAGTGTAGCTTCGGTTTATGGAGACACCTACCAAAGGCAAATGAGAAAACTTAGAAGCTTCCCCCAAGGAATTAGAAATTGTTACAATGTAAGTGTTAAAAAAGATACCAAATACTTGATTCGAGCAAATTTCTTATACGGGAATTATGATAGCCTAAATTCTTTACCGAAGTTTGATCTCTATATCGGGAATAGCTTATGGGAGACAATAAACTTCACTCAAGTTGGTATTGACGTTTTCAAAGATCTCATACATATTACCTCCTCAAATGAAGTTCACATCTGTCTGATCAATACTGGAAATGGGGTGCCATTTATCTCAGCCTTAGAATTTAGACCTTTACTCAACGTCACTTACGAAACAGCCTCAGGATCCTTATCACTGTATTATCGATTGGATGTCGGCTCAACAGACAATCAAACATACAGGTTCCCTTTTGATATTTATGATCGCATCTGGTCACCATTTACCTTCAATGAGTGGACACAAGTAAGCACCAATCAAACTGTAGATGCAACTGGTCACAACAATCACCAACCGCCATCCGTTGTAATGAAAACTGCCTCTGCCCGAATAAATGCAAGCAAGCCACTGGAAATTTGGTGGGATACAGAAGATTCATCTCGATATTATGTATTCATCCACGTTGCTGAAGTTGTAGAGCTTCAAGGCAACCAGAGTAGAGGATTCAATATCATGCACAATGGGGATCATTTTTATGGACCACTAATTCCAAGTTATTTATCCACGCTGACCATTTATGGCCAAAAACCATTGGCTGCAGCAGATAAACATACATTTTCTTTTAATCCAATTGAGAATGCAACGCTTCCTCCAATCGTTAATGCTTTCGAGATATATATAGTGAAAGATATATCAGAGCTTGAGGCAGACAAAGGAGATGTGGATGCAATTACCAATATCAAGTCAACCTATGGGGTAAAGAAGGATTGGCAAGGAGATCCATGCGTGCCAATGGGATATCTCTGGAGTGGATTAAATTGTAGCAATGAAGCTGCACCAAGAATTATATCCTTGAACTTATCTGCAAGTGGACTGAACGGTGAAATATCTTCTTACATATCCAGTCTAACCATGTTGCAAACTTTGGACTTGTCAAACAACAATTTGACAGGGCAAGTGCCTGATTTCCTGTCTAGTTTGTCACACCTCAAAACTCTGAACCTAGGTAACAACAAGCTCTCAGGTCCAATTCCAGCTGAGCTTTTGAAAAGATCCAATGATGGTTCACTATCATTAAGTGTGGGAGGTAACCAAAATCTCGATGGATGTGCATCAGATCCATGTCCAAAGAATGAGGAGAAGAACAACATCATCATTCCAATTGTAGCATCAATTGGTGGATTCCTAGTTGTCGTCACAATTGCTGCAATAACCTTTTGGATCATTAAATCTCGAAAGAAACAACAAGGTAAAAATGTTGTCTCAGTGGTGGATAAGTCAGAAACCAACAGTCAGTTTGGTGCTTCATTGGAGATGAGAAGACGTCAATTTACATATTCTGAAGTGGTGAAAATGACCAACAATTTCAAAAAAGTTCTGGGTAAAGGAGGTTTTGGGGAGGTCTATTATGGTGTCATCGATGAAGTTCAAGTGGCCGTTACCCTTCTTATGAGAGTTCACCATAGAAACTTGACCAGCCTCGTTGGATATTTGAATGAAGGAAACCACCTCGGCCTCATTTACGAGTACATGGCCAATGGAGATTTGGCCGAACAACTTTCAGAGAGGAGTGTACGTATCCTAAGCTGGGAAGATAGACTTCGAATAGCAATGGATGCAGCTCAAGGACTGGAGTACTTGCATTACGGTTGTAAGCCACCCATAGTTCACAGAGATGTGAAAACAACAAACATCTTATTGACAGATAATTTCCAAGGTAAACTTGCAGATTTTGGTCTTTCCAAAAGCTTCCCCACAGATGGCAACACCCACATGTCCACGGTTGTTGCTGGCACTCCTGGTTACCTTGATCCAGAGTACTACGTATCAAACAGGCTAACAGAGAAAAGCGATGTATACAGCTTTGGGATAGCTCTATTAGAGATAATCAGTTGCAAACCAGTAATATCAAGAACCGGAGATACACCACATATAGCTAAATGGGTTACCTCTTTGCTGGCGCAAGGAGATATTCGGAGTATAGTCGATCCAAGATTAGAAGGGCAATATGAAACAAACTCTGTTTGGAAGACGGTGGAAGTGGCAATGGCTTGTGTAGCGGCAAATTCCAGTAGAAGGCCGACGATGAGCGACGTTATGGCGGAACTCAAAGATTGCTTAGCTACGGAATTGAGTCGAAAGCTTGAGAATCGTTCGCTTGATTCAACAAATTCCATTGAAATGAGGATTCAGTGCTTCCGATTCCAGTCCCATGGCGAGGTGAATATCGAATCATCGATCTTGAAAATATGGATCACTTCCCTGTGTTCTAAATCTTGGGCCGCCTTCATCTTCTTTTGGGGTCTATTTCTCGAAGGAGATCTCTCTGACAATCATCAAAACATCTAG 5010 40.54 MNGLAFLNLVQAQGQLGFISLDCGLPPNTNYIEPTTTLQFTSDAAYINSGESKSLSSNYNEYLQRQYHHLRSFPQGRRNCYNISVKQNTKYLMRASFFYGNYDGLSQLPKFNLYFGDSLWKTVNFTDENTDTTIDSIHVTSDNQVQICLVNTDTGTPFISSLEFRPLPNETYKFLTRSLLLYYRLDMGTTTNKTYRFPSDIYDRFWSPFNWYEWTSISTALMIDSTDNNYYQPGSAVMETAAIRIDTKKPMEIWWEPEDENTQYYVYMHFAEVENLQGNQSRGFNEFVIEWIDRRDFSKYRESTNATNIVSKWLDVLNPTPIGTTLEINQDLSNNGLTGNIPDFLSNLSNLEVLKLDNNKLTGSVPTELVKRLNNGSLSLSVQGNPNLDCISDSCKSKKTSVVIPIVASIGGVIVIIVVSIIILWIVKSRKKRQNETVVPKVDPSGTNDQLSDQLLETRRRQFTYSEVLRMTNNFERILGKGGFGMVYYGTINDTQVAVKMLSQASGQGYQQFQAEVTLLLRVHHKNLTSLVGLRIAMDAAQGLEYLHDGCKPPIIHRDVKTTNILLTENFQAKLADFGLSKSFPVDGNKTNNYMSTIVAGTPGYLDPDYYLSNRLTEKSDVYSFGVALLEIISCRPVISRSEENVHISKWVNSMVAQGDINGIVDERLRGKYGANSVWKAVEVALSCVSGNSGRRPTMNHVVAELKSCLAMELERTPESQGFDSMNSVKMMSIVMDYSESAPMASSSYEMRRKQTQEDEDYGIVRAPFPLWFSAILTLQLLVQAQDQSGFISLDCGTPESTSYTETTTKINYVSDAPYINSGVSGSVASVYGDTYQRQMRKLRSFPQGIRNCYNVSVKKDTKYLIRANFLYGNYDSLNSLPKFDLYIGNSLWETINFTQVGIDVFKDLIHITSSNEVHICLINTGNGVPFISALEFRPLLNVTYETASGSLSLYYRLDVGSTDNQTYRFPFDIYDRIWSPFTFNEWTQVSTNQTVDATGHNNHQPPSVVMKTASARINASKPLEIWWDTEDSSRYYVFIHVAEVVELQGNQSRGFNIMHNGDHFYGPLIPSYLSTLTIYGQKPLAAADKHTFSFNPIENATLPPIVNAFEIYIVKDISELEADKGDVDAITNIKSTYGVKKDWQGDPCVPMGYLWSGLNCSNEAAPRIISLNLSASGLNGEISSYISSLTMLQTLDLSNNNLTGQVPDFLSSLSHLKTLNLGNNKLSGPIPAELLKRSNDGSLSLSVGGNQNLDGCASDPCPKNEEKNNIIIPIVASIGGFLVVVTIAAITFWIIKSRKKQQGKNVVSVVDKSETNSQFGASLEMRRRQFTYSEVVKMTNNFKKVLGKGGFGEVYYGVIDEVQVAVTLLMRVHHRNLTSLVGYLNEGNHLGLIYEYMANGDLAEQLSERSVRILSWEDRLRIAMDAAQGLEYLHYGCKPPIVHRDVKTTNILLTDNFQGKLADFGLSKSFPTDGNTHMSTVVAGTPGYLDPEYYVSNRLTEKSDVYSFGIALLEIISCKPVISRTGDTPHIAKWVTSLLAQGDIRSIVDPRLEGQYETNSVWKTVEVAMACVAANSSRRPTMSDVMAELKDCLATELSRKLENRSLDSTNSIEMRIQCFRFQSHGEVNIESSILKIWITSLCSKSWAAFIFFWGLFLEGDLSDNHQNI 1669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35780905 35794370 - Lsi02G029690.1 Lsi02g02969 657711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02969 1669 Gene3D Transferase(Phosphotransferase) domain 1 537 736 - -
Lsi02g02969 1669 Pfam Malectin-like domain 21 307 IPR024788 -
Lsi02g02969 1669 Pfam Malectin-like domain 794 1114 IPR024788 -
Lsi02g02969 1669 ProSitePatterns Protein kinases ATP-binding region signature. 479 500 IPR017441 GO:0005524
Lsi02g02969 1669 Gene3D Ribonuclease Inhibitor 330 377 IPR032675 -
Lsi02g02969 1669 PANTHER PUTATIVE-RELATED 534 745 - -
Lsi02g02969 1669 Pfam Protein kinase domain 537 704 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g02969 1669 PANTHER PUTATIVE-RELATED 330 533 - -
Lsi02g02969 1669 PANTHER PUTATIVE-RELATED 776 1613 - -
Lsi02g02969 1669 Gene3D Phosphorylase Kinase; domain 1 1322 1365 - -
Lsi02g02969 1669 Pfam Leucine Rich repeats (2 copies) 1191 1227 IPR025875 -
Lsi02g02969 1669 PANTHER OS07G0107800 PROTEIN-RELATED 534 745 - -
Lsi02g02969 1669 PANTHER OS07G0107800 PROTEIN-RELATED 5 285 - -
Lsi02g02969 1669 SUPERFAMILY Protein kinase-like (PK-like) 451 706 IPR011009 -
Lsi02g02969 1669 ProSiteProfiles Leucine-rich repeat profile. 1192 1214 IPR001611 GO:0005515
Lsi02g02969 1669 Gene3D Ribonuclease Inhibitor 1128 1247 IPR032675 -
Lsi02g02969 1669 ProSiteProfiles Protein kinase domain profile. 367 710 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g02969 1669 Pfam Protein tyrosine and serine/threonine kinase 475 534 IPR001245 GO:0004672|GO:0006468
Lsi02g02969 1669 Pfam Protein tyrosine and serine/threonine kinase 1366 1590 IPR001245 GO:0004672|GO:0006468
Lsi02g02969 1669 Gene3D Transferase(Phosphotransferase) domain 1 1398 1615 - -
Lsi02g02969 1669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1442 1454 IPR008271 GO:0004672|GO:0006468
Lsi02g02969 1669 PANTHER OS07G0107800 PROTEIN-RELATED 330 533 - -
Lsi02g02969 1669 SUPERFAMILY L domain-like 331 375 - -
Lsi02g02969 1669 SUPERFAMILY Protein kinase-like (PK-like) 1320 1590 IPR011009 -
Lsi02g02969 1669 SMART serkin_6 1341 1594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g02969 1669 SMART serkin_6 473 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g02969 1669 SMART LRR_typ_2 1190 1213 IPR003591 -
Lsi02g02969 1669 SMART LRR_typ_2 1214 1238 IPR003591 -
Lsi02g02969 1669 SMART LRR_typ_2 348 372 IPR003591 -
Lsi02g02969 1669 PRINTS Leucine-rich repeat signature 1193 1206 - -
Lsi02g02969 1669 PRINTS Leucine-rich repeat signature 1214 1227 - -
Lsi02g02969 1669 Gene3D Phosphorylase Kinase; domain 1 455 536 - -
Lsi02g02969 1669 Gene3D Phosphorylase Kinase; domain 1 1366 1397 - -
Lsi02g02969 1669 SUPERFAMILY L domain-like 1152 1240 - -
Lsi02g02969 1669 ProSiteProfiles Protein kinase domain profile. 1341 1594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g02969 1669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 555 567 IPR008271 GO:0004672|GO:0006468
Lsi02g02969 1669 PANTHER OS07G0107800 PROTEIN-RELATED 776 1613 - -
Lsi02g02969 1669 PANTHER PUTATIVE-RELATED 5 285 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00566 Lsi-Chr1:4531889 Lsi02g02969 Lsi-Chr2:35780905 5.15E-31 dispersed
Lsi02g02962 Lsi-Chr2:35745867 Lsi02g02969 Lsi-Chr2:35780905 6.45E-59 dispersed
Lsi02g02964 Lsi-Chr2:35754293 Lsi02g02969 Lsi-Chr2:35780905 6.65E-19 dispersed
Lsi02g02965 Lsi-Chr2:35766092 Lsi02g02969 Lsi-Chr2:35780905 6.60E-128 dispersed
Lsi02g02966 Lsi-Chr2:35768449 Lsi02g02969 Lsi-Chr2:35780905 2.04E-15 dispersed
Lsi02g02969 Lsi-Chr2:35780905 Lsi02g02974 Lsi-Chr2:35839759 1.31E-49 dispersed
Lsi02g02973 Lsi-Chr2:35830652 Lsi02g02969 Lsi-Chr2:35780905 1.23E-13 dispersed
Lsi07g00541 Lsi-Chr7:5712043 Lsi02g02969 Lsi-Chr2:35780905 2.57E-17 dispersed
Lsi02g02968 Lsi-Chr2:35774653 Lsi02g02969 Lsi-Chr2:35780905 3.97E-46 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83453 PF12819 Malectin_like 3.30E-107 CL0202 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02969 - - csv:101206211 1498.41