Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02980 ATGTCGTGGCAAACGTACGTGGACGATCACCTGATGTGTGAGATTGAAGGAAACCATCTGACCTCCGCCGCCATCATCGGACACGACGGCAGTGTTTGGGCGCAGAGCTCCTCATTCCCTCAGTTTAAGGCGGAGGAGATATCGGCGATTATGAAGGATTTTGATGAGCCTGGCTCTCTTGCCCCAACTGGTTTACATCTTGGTGGCACCAAGTACATGGTGATCCAAGGAGAGCCTGGAGCCGTTGTTCGTGGCAAAAAGGGTGCTGGGGGAATCACTGTGAAGAAAACTGAGAAGGCAGTGATAATTGGGATATATGACGAACCTTTGACTCCAGGACAATGCAATATGGTGGTTGAAAGATTGGGAGATTACCTCGTCGAACAGGGTTTGTAG 396 50.25 MSWQTYVDDHLMCEIEGNHLTSAAIIGHDGSVWAQSSSFPQFKAEEISAIMKDFDEPGSLAPTGLHLGGTKYMVIQGEPGAVVRGKKGAGGITVKKTEKAVIIGIYDEPLTPGQCNMVVERLGDYLVEQGL 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35886922 35888969 + Lsi02G029800.1 Lsi02g02980 657722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02980 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779
Lsi02g02980 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779
Lsi02g02980 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779
Lsi02g02980 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Lsi02g02980 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779
Lsi02g02980 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779
Lsi02g02980 131 PANTHER PROFILIN 1 131 IPR005455 GO:0003779
Lsi02g02980 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779
Lsi02g02980 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779
Lsi02g02980 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779
Lsi02g02980 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Lsi02g02980 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779
Lsi02g02980 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779
Lsi02g02980 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779
Lsi02g02980 131 Gene3D Dynein light chain 2a, cytoplasmic 1 131 - -
Lsi02g02980 131 CDD PROF 2 130 IPR005455 GO:0003779
Lsi02g02980 131 Pfam Profilin 1 130 IPR005455 GO:0003779
Lsi02g02980 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Lsi02g02980 131 SMART prof_2 1 131 IPR005455 GO:0003779
Lsi02g02980 131 PANTHER PROFILIN 1 131 - -
Lsi02g02980 131 SUPERFAMILY Profilin (actin-binding protein) 2 130 IPR036140 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi02g02980 Lsi07g00531 CCT
Lsi02g02980 Lsi07g00531 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02980 Lsi-Chr2:35886922 Lsi11g00216 Lsi-Chr11:2216057 3.17E-82 dispersed
Lsi04g02319 Lsi-Chr4:30391453 Lsi02g02980 Lsi-Chr2:35886922 3.60E-75 transposed
Lsi02g02980 Lsi-Chr2:35886922 Lsi07g00531 Lsi-Chr7:5651707 9.85E-78 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02980 K05759 - jre:108981956 246.514