Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00010 ATGGAGAAATCTGGATATGGTCGCGATGGAATTTTCAGGTCTTTACGGCCTCCGCTCGTCTTTCCTAAAGACCCCAATCTCTCGATGATCTCTTTTCTCTTCCGAAATTCATTGTCATATCCAAATAGACTAGCCATTGTCGATGCGGAATCTTCTGATTCTGTGTCGTATTCTCAACTTAAAGCCTCGGCAATTAAGGTCTCCAATGGGTTGATCCAATTGGGTATTGAGAAAAACGACGTGGTGTTGATTTTTGCCCCAAATTCAGTTCAATTTTCCATTTGTTTCTTTGGGATTATTGCCATTGGGGCTATTGTAACCACTTGTAATCCTGTCTACACGGTCTCTGAGCTAACCAAGCAAGTTAAAGATGCTAAACCCAAACTTGTGATATCTGTTGCTGAATTGTGGGACAAAGTGAAGGATCTAAACATCCCAACTGTGTTACTGGACCAGCAGATTCCTTCAGCAATTCACTCTTCCAAAATATTATGTTTCAATGATTTGATGAATATGGCTGGTGATAAATCTGGGTCTGAGTTCCCAATTGTTGGGGTGAAACAGAGTGATACAGCTGCACTTCTGTATTCATCAGGAACAACAGGAGCTAGTAAGGGTGTGATTCTGACTCACAGAAATTTCATAACGTCTTCATTGATGATAACAATGGATCAGACGTTTAAGGGAGAGGAACATGGCGTATATCTGAACTTCTTGCCAATGTTTCATGTGTTTGGATTGGCTTGTATAACATATGCGCAGCTGCAGAAAGGAAACATCATTGTCTCTATGCCAAAGTTTAACCTGGAGAAGGCCTTGTGGGCAGTGGAGAAGTACAAGGTGACAGATCTGTGGGTTGTGCCGCCTGTTGTGCTTGCTTTGGCAAAGCAGAGTGTGGTGAAGAAGTACAACCTTTCATCCGTGAAGCGTGTCGGTTCAGGGGCTGCACCTCTCGGGAAGGAATTAATGGAAGAATGTGCTAATAACATTCCCAGTGCTGTGGTTCTCCAGGGTTATGGTATGACGGAGACTTGTGGAGTTGTTGCTTTGGAGAATCCAGAAGTTGGCAAACGAAATTCTGGTTCAGCTGGAACACTTGCCTCTGGTGTGGAGGCTAAAATAGTCAGTGTAGATACTTTGAAACCTCTACCTCCTAATCAATATGGAGAGATACATGTTCGGGGACCAAACATGATGCTCGGTTATTTCAACAATCCAGAAGCCACCAAGCAAACTATTGATAAATATGGCTGGGTGCATACTGGAGACCTTGGATACTTCGATGAAAATGGTCAGCTTTATGTTGTCGACCGAATCAAGGAACTCATCAAGTACAAAGGTTTTCAGGTTGCACCAGCTGAGCTTGAAGCACTGTTGGTTTCTCACCCTGAGATACTAGATGCTGTTGTCATCCCCTACCCCGATGCTGAAGCTGGAGAAGTTCCAATCGCATATGTTGTTCGATCTACCAATAGTTCTTTGACCGAAGAGGACATCCTTAAATTCATTGCCGATCAGGTTTCTCCTTACAAAAGGTTAAGAAAAGTGACATTCATCAGCAGTGTCCCCAAGTCTGTTTCTGGGAAAATCCTCAGGAGAGAACTCATTGAGAAAGTAAGAGCTAAAATCTGA 1632 43.14 MEKSGYGRDGIFRSLRPPLVFPKDPNLSMISFLFRNSLSYPNRLAIVDAESSDSVSYSQLKASAIKVSNGLIQLGIEKNDVVLIFAPNSVQFSICFFGIIAIGAIVTTCNPVYTVSELTKQVKDAKPKLVISVAELWDKVKDLNIPTVLLDQQIPSAIHSSKILCFNDLMNMAGDKSGSEFPIVGVKQSDTAALLYSSGTTGASKGVILTHRNFITSSLMITMDQTFKGEEHGVYLNFLPMFHVFGLACITYAQLQKGNIIVSMPKFNLEKALWAVEKYKVTDLWVVPPVVLALAKQSVVKKYNLSSVKRVGSGAAPLGKELMEECANNIPSAVVLQGYGMTETCGVVALENPEVGKRNSGSAGTLASGVEAKIVSVDTLKPLPPNQYGEIHVRGPNMMLGYFNNPEATKQTIDKYGWVHTGDLGYFDENGQLYVVDRIKELIKYKGFQVAPAELEALLVSHPEILDAVVIPYPDAEAGEVPIAYVVRSTNSSLTEEDILKFIADQVSPYKRLRKVTFISSVPKSVSGKILRRELIEKVRAKI 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 165966 169444 - Lsi03G000100.1 Lsi03g00010 657760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00010 543 Gene3D - 10 440 IPR042099 -
Lsi03g00010 543 Gene3D - 441 542 IPR045851 -
Lsi03g00010 543 CDD 4CL 21 535 - -
Lsi03g00010 543 Pfam AMP-binding enzyme 36 445 IPR000873 -
Lsi03g00010 543 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 4 542 - -
Lsi03g00010 543 SUPERFAMILY Acetyl-CoA synthetase-like 17 541 - -
Lsi03g00010 543 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 4 542 - -
Lsi03g00010 543 Pfam AMP-binding enzyme C-terminal domain 454 529 IPR025110 -
Lsi03g00010 543 ProSitePatterns Putative AMP-binding domain signature. 194 205 IPR020845 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00080 Lsi-Chr1:787142 Lsi03g00010 Lsi-Chr3:165966 5.95E-27 dispersed
Lsi03g00010 Lsi-Chr3:165966 Lsi03g02006 Lsi-Chr3:31429769 0 dispersed
Lsi09g00465 Lsi-Chr9:4864794 Lsi03g00010 Lsi-Chr3:165966 1.06E-58 dispersed
Lsi10g00232 Lsi-Chr10:3770732 Lsi03g00010 Lsi-Chr3:165966 6.73E-111 dispersed
Lsi03g00010 Lsi-Chr3:165966 Lsi02g02635 Lsi-Chr2:32778201 1.23E-136 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00010 K01904 - csv:101220141 998.423