Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00011 ATGGCTTCCTCATCAGTGGCCACCATTTTATCCCGTCTCTCTCTTTTGGGGTTTGCTTCAAGATCTTCTGTAAACCCATTATTTATTCCCCCCAAAAGTAGTAGAATCGAGAGATTGAATCGATTAAGACCCTTCTCCATGGCTTCGTCTTCCAAAGAATCTCCAGCCAACAATCCAGGACTTCATGTTACCCCCGATGATGCTACTAAAGATTACATCATGCAACAGACTATGTTTCGGATTAAGGATCCTAAAGCCAGTCTTGACTTCTATTCTCGAGTTCTGGGAATGTCATTACTCAAGAGGCTGGATTTCCCTGAAATGAAGTTTAGCTTGTACTTTGTGGGTTATGAGGATCCTGCTTCTGCACCAGAAAGCTCAGTTGATAGAACAGTGTGGACTTTTGGTCGAAAGGCTACGATTGAGTTAACACACAACTGGGGTACTGAAAGTGACCCTGAATTCAAAGGATATCATAATGGGAACTCAGATCCCCGTGGCTTTGGACACATTGGCATAACTGTTGATGACACAATTAAGGCATGTGAAAGATTTGAACGCCTAGGTGTGGAATTTGTTAAGAAACCAGATGACGGCAAGATGAAAGGAATTGCATTTATAAAGGATCCTGATGGCTACTGGATTGAAATTTTTGACCTCAAAACTATTGGAAAGCTTACTTCTGACTCTGCTTGA 696 41.95 MASSSVATILSRLSLLGFASRSSVNPLFIPPKSSRIERLNRLRPFSMASSSKESPANNPGLHVTPDDATKDYIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFVGYEDPASAPESSVDRTVWTFGRKATIELTHNWGTESDPEFKGYHNGNSDPRGFGHIGITVDDTIKACERFERLGVEFVKKPDDGKMKGIAFIKDPDGYWIEIFDLKTIGKLTSDSA 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 180329 186737 + Lsi03G000110.1 Lsi03g00011 657761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00011 231 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 76 217 IPR004360 -
Lsi03g00011 231 ProSitePatterns Glyoxalase I signature 2. 161 177 IPR018146 GO:0004462|GO:0046872
Lsi03g00011 231 MobiDBLite consensus disorder prediction 47 66 - -
Lsi03g00011 231 CDD GlxI_Zn 74 218 - -
Lsi03g00011 231 TIGRFAM glyox_I: lactoylglutathione lyase 62 225 IPR004361 GO:0004462|GO:0046872
Lsi03g00011 231 Gene3D - 47 225 IPR029068 -
Lsi03g00011 231 PANTHER LACTOYLGLUTATHIONE LYASE 32 226 - -
Lsi03g00011 231 PANTHER LACTOYLGLUTATHIONE LYASE GLYOXALASE I 32 226 - -
Lsi03g00011 231 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 65 219 IPR029068 -
Lsi03g00011 231 ProSitePatterns Glyoxalase I signature 1. 76 97 IPR018146 GO:0004462|GO:0046872
Lsi03g00011 231 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 73 220 IPR037523 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00011 Lsi-Chr3:180329 Lsi11g00244 Lsi-Chr11:2477447 2.69E-11 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00011 K01759 - mnt:21403510 380.948