Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00014 ATGCCCAATGAGTTGCCACAAAAGCCTCCCCCTTCTATAGCTCACCGGTTTAGAGCTCAGTTAAAGCAGCGGGATGACGAATTCAGGGTTTCTGGCCATGATGTTGTGCCCCCTCCTACTGCTGAGGATATCGTGCAGTTGTACGACCTCATGTTGTCGGAGCTCACCTTTAATTCGAAGCCCATCATTACGGATCTCACGGTTCTTGCTGACGAGCAGAGAGAACATGGGAAGGGCATTGCTGACTTAATTTGTGCACGTATTCTCGAGGTTCCGGTTGAGCAAAAACTTCCTTCATTATATTTATTGGATAGCATCGTTAAGAATGTTGGGCACGAATACATCAGTTATTTCTCGTCTCGTTTACCTGAGGTGTTTTGCGAGGCTTACAGGCAAGTTCATCCTAATTTGCATAATGCAATGCGCCACCTCTTTGGGACATGGGCAACTGTGTTTCCACCATCCATCATTCGGAAGATTGAAGCTCAACTTTCTCAGCTAACAGCACAAGAGTCGTCAAGTTTGACATCCTCAAGGGCTTCTGAATCTCCTCGGCCAACTCATGGCATTCATGTCAATCCAAAATACTTGCGTCAACTGGAACATTCAGTGGTGGATAAAAGGTTGTGTGCTTTGGTTAATTTCGTAGCGGTTGTTTCCTTCGATATACACTTTGAGGGTGGGGAAGTTGAGCATAACCAAGATGCAAGAGGGGCCTCAGCTCTAAAAGTTCATGATAAAAAGCTTGCTCCCGGATATGAAGAGTATGATTACGATCATGCAGATGTTCTTGAACATGGTGGATCTCAAGCATTTCGTTCAATGGGAAGCATGGGCCATGATTCTTTTGCTCTTGGAATAAATAAAACAAATATAAAGCTAGCCAAATCGTCTGCGTCTTCAAGAATTGGACACAATAGACCTCTACAATCAGCTGGTGATGAACTTGAAGCAGTAAGAGCCTCACCCTCGCAGAATGTATATGATTATGAAGGTTCTAGAATGATTGATAGAATTGAGGATACTAATAAATGGAGAAGAAAACAATATCCTGACGATAATCTGAATGGACTTGAAAGTACTTCATATAATATTAGAAATGGACATGCACTTGAGGGACCAAGAGCTTTAATTGAAGCATATGGAAGTGATAAAGGAAAGGGTTATTTAAATGACAATCCTCCTCAGGCTGAACATTTTTCTATCAATGGTATAGACAACAAGGTGACTCCAGTAACATGGCAGAACACTGAAGAAGAAGAGTTTGATTGGGAAGATATGAGCCCCACATTAGCTGATAGAGGCAGAAATAATGATATGTTGAAGCCACCTGTCCCGCCTTCAAGATTTAGGACAAGAACAGGATTTGAAAGATCAAATGCTATGTCTATAGAGCCTGGAATGAGAAGCAATTGGTCTAGTCAGTGTCAGCTACCTACTATTGATTCCTCCATGGTTGTTGAAGATGTGGTCCAATCAACACCTGATATTTGGAATATGCACAATCACATTTCTCAGACATCCCAGAACCTCATGAACAATAAAGGAGCAGGAAGAAATTTCCAGATGCCTTCGTTGGGGAGAGGCATAGCTTCATCTGGTGGTGAGAAGATGTCTCCTTTTGTTGACAAGCTTTTGACCAATGATGCTTTACATAGGCCCACTACCATTGCTTCGAGATTGGGTTCTTCTGGTCTTGACTCTAGCATGGAGTCGCAATCAATTGTACAATCTATGGGCCCAAGGCATCCTCTGAATCTTCCTAACTCTTGCCCACCCTCTAGACCTCCAATTTTTCCTGTACCAAGACACAATAAGAGTCAGTTTGAGTCTTTAAATGGTAGTAATTCTCTCATCAATCGTGCAAATAGGTCTTTTTTGCCTGAGCAGCAGATGAATAACATGAGAAATAAGGAGCTAAGTCTTACAACTAAGTCGCCACAAGTTGGCAATCAACATACTGGGCATATTCCTTTAACTCGGGGAAACCAATTGCCGGCCATCCCTTTAAAACCGCAATTTCTACCATCTCAGGACATGCAGGATAATTTAAATGCATCAACAGTACCTCCAGCATTACCGCATTTAATGGCACCATCTTTGAGTCAAGGATACATTTCACAAGGATATCGCCCTGTTATTAGTGAGTGTTTGTCAAGTTCTGCCCCTATTGGGCAATGGAATTTGCCTGTTCATAATAGCCCCAGTAACCCTTTTCTTTTACAAGGGGGGCCGCTGCCACCTCTTCCACCTGGGCCTCATCCTACATCTGCTCCGTCAATATCTCTCTCTCAAAAGGCAGGATCCCTTGTTCCTGGTCAGCAACCAGGAACTGCATTTTCTGGCCTGATAAGTTCTCTCATGGCCCAGGGTTTAATCTCATTGAACAATCAAGCTTCTGTACAGGATTCTGTTGGGTTAGAATTCAATCCAGATGTACTCAAGGTGCGACATGAATCTGCAATAACTGCTCTATATGCTGATCTACCTAGACAATGCATGACCTGTGGCCTTCGATTCAAGACCCAGGAAGAGCATAGTAATCATATGGATTGGCATGTCACTAAAAACCGTATGTCAAAAAGTAGGAAGCAAAAGCCTTCTCGCAAGTGGTTTGTAAGTATAAGCATGTGGCTTAGCGGTGCAGAGGCTCTGGGAACGGAGGCAGTTCCAGGATTTTTGCCTGCTGAGGTCATTGTAGAGAAAAAAGATGATGAAGAACTGGCTGTTCCCGCTGACGAGGATCAGAAGACATGTGCATTATGTGGAGAACCTTTTGAGGATTTTTACAGTGATGAAACAGAGGAGTGGATGTATCGGGGCGCTGTCTACATGAATGCACCTGATGGACAAACAGCCGGCATGGATAGATCTCAGTTAGGGCCCATAGTGCATGCTAAATGCAGGACCGAAACTAATGTTGTTCCCTCCGAAAGTTTTGACCAAGATGAACCAGGGGGATTAAGTGAAGAGGAACCGAGTCGCCAGCCCCTTCACGCCATCTCCTTCTCACTCTCGATAATCTCTCTCTCCCCGGAATCTGCCCCTTCGTCATCTTTCTTCTTCGTGTTCAGCAACCTAGACGTCGACGTCCAGGCAATCGCCGTCGAGAGTCTCCACCGCCGGACGAGAGAGATGGAGAAAATGATGAGCATCTTGAAGCCCAAACCAAATCCGCAGCAACAGCTGAGGGATTGGCAGCGTAGGCTCCGACAAGAGTGCCGGAACGTCGAACGCCAAATTCGAGACATACAGAGAGAGGAGAAAAATGTGCAGAAAGCCATTAGGGATGCTGCCAAGAGGAATGATATGGTCTCTGCAAAGGCACTGGCCAAAGAGATCGTGAGGTCTAAAAAAACTGTGAACCGTCTTCACGAAAACAAGGCACAACTTAATTCGATATCCATGCACCTTGGCGAAAGTGTTGCCATTGCGAGAACGGTCGGTCATCTTTCCAAGAGTGCTGAAGTTATGAAGCTTGTTAATAATTTGATGAAGGCCCCAGAAATGGCAACTACAATGCAAGAGTTTAGCAAGGAGATGACCAAGGCTGGGGTGATCGAGGAATTTGTAAATGATGCGGTGGATTCAGCACTAGATTCTGAGGATATTGAAGAGGAGATTGAAGAGGAAGTTGACAAAGTTTTGACTGCCATTGCCGGTGAGACTGCAGCACAGCTTCCAGAAGCTGTCAGGAAGGAAAGGATGAAGCAACCAGCTCGTGTGCAGGAAGTCCGAGAAGAGGAAGAAGCAATAGCTGAGGGCGTTGACGACGAGGAAGAACTTGAAGAGATAAGGGCTCGACTTGCAAAAGTTAGATCATAA 3825 44.71 MPNELPQKPPPSIAHRFRAQLKQRDDEFRVSGHDVVPPPTAEDIVQLYDLMLSELTFNSKPIITDLTVLADEQREHGKGIADLICARILEVPVEQKLPSLYLLDSIVKNVGHEYISYFSSRLPEVFCEAYRQVHPNLHNAMRHLFGTWATVFPPSIIRKIEAQLSQLTAQESSSLTSSRASESPRPTHGIHVNPKYLRQLEHSVVDKRLCALVNFVAVVSFDIHFEGGEVEHNQDARGASALKVHDKKLAPGYEEYDYDHADVLEHGGSQAFRSMGSMGHDSFALGINKTNIKLAKSSASSRIGHNRPLQSAGDELEAVRASPSQNVYDYEGSRMIDRIEDTNKWRRKQYPDDNLNGLESTSYNIRNGHALEGPRALIEAYGSDKGKGYLNDNPPQAEHFSINGIDNKVTPVTWQNTEEEEFDWEDMSPTLADRGRNNDMLKPPVPPSRFRTRTGFERSNAMSIEPGMRSNWSSQCQLPTIDSSMVVEDVVQSTPDIWNMHNHISQTSQNLMNNKGAGRNFQMPSLGRGIASSGGEKMSPFVDKLLTNDALHRPTTIASRLGSSGLDSSMESQSIVQSMGPRHPLNLPNSCPPSRPPIFPVPRHNKSQFESLNGSNSLINRANRSFLPEQQMNNMRNKELSLTTKSPQVGNQHTGHIPLTRGNQLPAIPLKPQFLPSQDMQDNLNASTVPPALPHLMAPSLSQGYISQGYRPVISECLSSSAPIGQWNLPVHNSPSNPFLLQGGPLPPLPPGPHPTSAPSISLSQKAGSLVPGQQPGTAFSGLISSLMAQGLISLNNQASVQDSVGLEFNPDVLKVRHESAITALYADLPRQCMTCGLRFKTQEEHSNHMDWHVTKNRMSKSRKQKPSRKWFVSISMWLSGAEALGTEAVPGFLPAEVIVEKKDDEELAVPADEDQKTCALCGEPFEDFYSDETEEWMYRGAVYMNAPDGQTAGMDRSQLGPIVHAKCRTETNVVPSESFDQDEPGGLSEEEPSRQPLHAISFSLSIISLSPESAPSSSFFFVFSNLDVDVQAIAVESLHRRTREMEKMMSILKPKPNPQQQLRDWQRRLRQECRNVERQIRDIQREEKNVQKAIRDAAKRNDMVSAKALAKEIVRSKKTVNRLHENKAQLNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLMKAPEMATTMQEFSKEMTKAGVIEEFVNDAVDSALDSEDIEEEIEEEVDKVLTAIAGETAAQLPEAVRKERMKQPARVQEVREEEEAIAEGVDDEEELEEIRARLAKVRS 1274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 215300 230672 - Lsi03G000140.1 Lsi03g00014 657764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00014 1274 MobiDBLite consensus disorder prediction 171 191 - -
Lsi03g00014 1274 SMART 558neu5 43 165 IPR006569 -
Lsi03g00014 1274 MobiDBLite consensus disorder prediction 429 452 - -
Lsi03g00014 1274 ProSitePatterns Zinc finger C2H2 type domain signature. 833 853 IPR013087 -
Lsi03g00014 1274 ProSiteProfiles CID domain profile. 40 168 IPR006569 -
Lsi03g00014 1274 MobiDBLite consensus disorder prediction 740 774 - -
Lsi03g00014 1274 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 7 974 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Lsi03g00014 1274 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 7 974 - -
Lsi03g00014 1274 MobiDBLite consensus disorder prediction 975 994 - -
Lsi03g00014 1274 CDD CID_Pcf11 45 164 - -
Lsi03g00014 1274 Coils Coil 1067 1101 - -
Lsi03g00014 1274 MobiDBLite consensus disorder prediction 758 774 - -
Lsi03g00014 1274 Pfam Snf7 1066 1233 IPR005024 GO:0007034
Lsi03g00014 1274 MobiDBLite consensus disorder prediction 741 757 - -
Lsi03g00014 1274 SUPERFAMILY ENTH/VHS domain 40 168 IPR008942 -
Lsi03g00014 1274 Pfam CID domain 52 159 IPR006569 -
Lsi03g00014 1274 Gene3D - 38 166 IPR008942 -
Lsi03g00014 1274 Gene3D - 1053 1230 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02909 Lsi-Chr2:35271353 Lsi03g00014 Lsi-Chr3:215300 2.78E-12 dispersed
Lsi03g00014 Lsi-Chr3:215300 Lsi03g01937 Lsi-Chr3:30779726 4.80E-33 dispersed
Lsi03g00014 Lsi-Chr3:215300 Lsi06g00311 Lsi-Chr6:3551072 4.80E-14 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00014 K14400 - csv:101206311 1716.82