Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi03g00020 | ATGGGTCTAAACGTCAGCTTCAACTTGCTTCCCGGCTCTGATGGTAATTACGGTATTGCTTTTTATGGTTTATTGCAATATGGTATATTAACATTGGGAAATTTGGGGGACGGAAGCAATTTTATATGGTGTTGGAAGTGGATGGAACATAGTTATGGTTTTGAACAGCATGTTGCTCAACAAAGTCGGCGTGATAAGTTAAGAGTTCCGCAGAATTATTTGCGAGTGGGGGAATTATCAAGAAACACTGATGAACAATTGAGTTTTCACAACTCGGATCATTCGGGGCTCGATCTGGATCTTGTTAGAATTCAAAGTTTTAACAAGGATGCGATTTTGCCTCATGATCACTTGTCTTCGTTACCCTCAGAAATGATCAATTTCTCGAGAGATTCCAATGTTTTATCGCACCAAAGGGACATGATGTTGCGTCAAGAACTGGAAAACCCAGCTCAATGCAGTAGACAAATTGTGGCAGATGCCTCTGGTGGAATTGTAAATAATAGTGTTGATTATTGGAAAAGTTCTCATCAAAGCTGTGATTGGGTGGTGAACTGTGGAAGTAATTCTTTTGGAGGTGAAATGTTGAATCAGGAAGTAACTGATTCTACAGTGTATTCACTGAAGCCAACTTGCATTGGATTCCAAACTTCTTCCTCTTTTAACAATCCATCCAACGAGACATTCAATCAGGACGGACAAAAGCGTATAGGAGGAGAATTGCATTTGCCTCCAATTTACCAAAATACCCTTCAGGATGTTGTTACATCAGCCTCTATTCGAACTCAGGGCCTGGAAATGACATCCACTGTGCAGCATAATTTCACTGAAATTAACCAAACTGCTGCTTGTGAAGCCGGTGCGAATGAGCTTGCTCTTCTTCCAGTGTACAGGGATCAGCCAAATGTGTTGCCTTATGACAGTACTGGTTCTTGGACTGATAGAACTTTCTATAATTGCCGCAGCTGGATTGGTGAATTGGGCTCTATTGCTAGGAAAACCGATGAAGAGTTAAGGACTTTTATGAGTGATTCCAATCCACAAGGTCTAGCCCTATCGCTGTCTTCAAATCCACCGTCTAAATTTCCCACCACACAGTTTGAAGAATCAGAGGAATTACAGGAAAGTATCACTGGGTTAAAAAATTCCCAAGAATCCAAACCAGTCAAATCTGAGAGTTTGTGTAGATTACCAAAGCCAACATCTATTGGTAATAAAAATTATGGGAAATCTCTTCAAGATGTGATGGGAGTTCCTGTGAACCCATATAGAAACACAGGTCCTCTTGGCCCCTTTACTGGGTATGCAACCATTTTAAAGAGTTCAAAATTCTTAAAGCCTGCCCAACTGCTGTTAGACGAATTTTGTGGCTCACGTGGTCATTATAAGTTTGTCCAACCATGTGAGGTATTTGAGAAGGCACCTGGGGAAATTGGTGTCTCAGCGGCACTTAATGCATTTAGAAATGAGGTTGCTAAGGAAAATAGTTCGTGTGCAGATGCCTCTACATTCTGCGGTTCGAATGAATCAAATGTTAGTGGAGTTGGGAGCATCTCTTCTGAATCTCATCAACCGGAGTTTCAGCAAAAAAAAGCAAAACTTCTATATATGCTCGAGGAGGTTTGCAGAAGATACAAACAATATCATCAGCAAATGCAAATGGTAGTTTCATCCTTCGAATCAGTAGCTGGTCTTAGTTCTGCGACACCCTACATTTCCCTGGCACTCAAGACAGTCTCAAGACACTTCCGGTCTCTAAAGAATGCCATCTCAGAACAACTGAAGTATCTGAGGAAGGTACTTGGTGAGGATTTGTCATCTCCCTCTGCAGGGACAAGCGGTAGCAAAGGCGATGCAAATTCGGCTAGGTTGAAATACATGGAACAGAGCTTCCAGAAGCAAAAATCTGGCATTGTCAATTTTGGATTCCTCGAATCCCAAAATGCATGGAGGCCACAGAGAGGTTTGCCCGAACGAGCTGTGGCAATTCTTAGAGCCTGGCTCTTTGAGCATTTTCTTCACCCATACCCCACAGACACAGATAAACACATGTTGGCCACTCAAACAGGCCTATCTCGAAACCAGACTTATTTTTGGTGGAAAGTGGTGTTTAATTTGGTGGTTAACACAGTTTGTTTTGCTATTTCGTTTCCTTCTGCTTGCTGTGGCATAAAAGTGTCGAATTGGTTCATAAATGCCCGAGTACGGGTGTGGAAGCCAATGGTTGAAGAGATACACATGCTAGAAACCAAGGGCATGGCAGAAATGAACAACAAAAGACATGGTACGAGAGATGGAAGCTCTACATTAGAAAACACAGCCGGTTGGACCAGTAGTGAACACCAGCCTCTAAAAAACCATGGTGTTCCTAATGAAATGGCTAGTCATCATTTGCAGTGCTTGGGGGTAGATTCCTCAAGTGGCGACAGAAATGGACTCGGCAGCAGCGACCAACAGTGGGATCAAGGCAAACAATCCAAATTGGACAATGGGGTTCAGTCCAACATGGAAGGGGAATTGATGGGGTTCATGCCATATCAGGCCAGTGCGGCTGAGGTTGGAGGACACGGAGCTGTCTCTCTAACATTAGGCCTTCGCCATCGAGTCGAGAGTGCCCACCATCAACAGCAGCGGCATCAATTGCAGCAACAAGATGACCAACTAATACGCCACTATGGAAGCGAAATGATCCATGATTTTGTGGGGTAA | 2709 | 43.19 | MGLNVSFNLLPGSDGNYGIAFYGLLQYGILTLGNLGDGSNFIWCWKWMEHSYGFEQHVAQQSRRDKLRVPQNYLRVGELSRNTDEQLSFHNSDHSGLDLDLVRIQSFNKDAILPHDHLSSLPSEMINFSRDSNVLSHQRDMMLRQELENPAQCSRQIVADASGGIVNNSVDYWKSSHQSCDWVVNCGSNSFGGEMLNQEVTDSTVYSLKPTCIGFQTSSSFNNPSNETFNQDGQKRIGGELHLPPIYQNTLQDVVTSASIRTQGLEMTSTVQHNFTEINQTAACEAGANELALLPVYRDQPNVLPYDSTGSWTDRTFYNCRSWIGELGSIARKTDEELRTFMSDSNPQGLALSLSSNPPSKFPTTQFEESEELQESITGLKNSQESKPVKSESLCRLPKPTSIGNKNYGKSLQDVMGVPVNPYRNTGPLGPFTGYATILKSSKFLKPAQLLLDEFCGSRGHYKFVQPCEVFEKAPGEIGVSAALNAFRNEVAKENSSCADASTFCGSNESNVSGVGSISSESHQPEFQQKKAKLLYMLEEVCRRYKQYHQQMQMVVSSFESVAGLSSATPYISLALKTVSRHFRSLKNAISEQLKYLRKVLGEDLSSPSAGTSGSKGDANSARLKYMEQSFQKQKSGIVNFGFLESQNAWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQTYFWWKVVFNLVVNTVCFAISFPSACCGIKVSNWFINARVRVWKPMVEEIHMLETKGMAEMNNKRHGTRDGSSTLENTAGWTSSEHQPLKNHGVPNEMASHHLQCLGVDSSSGDRNGLGSSDQQWDQGKQSKLDNGVQSNMEGELMGFMPYQASAAEVGGHGAVSLTLGLRHRVESAHHQQQRHQLQQQDDQLIRHYGSEMIHDFVG | 902 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 394554 | 398548 | + | Lsi03G000200.1 | Lsi03g00020 | 657770 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi03g00020 | 902 | MobiDBLite | consensus disorder prediction | 805 | 829 | - | - | |
Lsi03g00020 | 902 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 82 | 699 | - | - | |
Lsi03g00020 | 902 | Pfam | Homeobox KN domain | 667 | 736 | IPR008422 | GO:0003677|GO:0006355 | |
Lsi03g00020 | 902 | MobiDBLite | consensus disorder prediction | 353 | 396 | - | - | |
Lsi03g00020 | 902 | SMART | prehox3 | 433 | 592 | IPR006563 | - | |
Lsi03g00020 | 902 | MobiDBLite | consensus disorder prediction | 767 | 783 | - | - | |
Lsi03g00020 | 902 | SUPERFAMILY | Homeodomain-like | 642 | 700 | IPR009057 | - | |
Lsi03g00020 | 902 | Pfam | Associated with HOX | 438 | 591 | IPR006563 | - | |
Lsi03g00020 | 902 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 726 | 869 | - | - | |
Lsi03g00020 | 902 | SMART | HOX_1 | 650 | 744 | IPR001356 | GO:0003677 | |
Lsi03g00020 | 902 | PANTHER | BEL1-LIKE HOMEODOMAIN PROTEIN 8 | 726 | 869 | - | - | |
Lsi03g00020 | 902 | CDD | homeodomain | 650 | 741 | IPR001356 | GO:0003677 | |
Lsi03g00020 | 902 | Gene3D | - | 653 | 745 | - | - | |
Lsi03g00020 | 902 | MobiDBLite | consensus disorder prediction | 353 | 390 | - | - | |
Lsi03g00020 | 902 | MobiDBLite | consensus disorder prediction | 757 | 783 | - | - | |
Lsi03g00020 | 902 | PANTHER | BEL1-LIKE HOMEODOMAIN PROTEIN 8 | 82 | 699 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g01477 | Lsi-Chr1:12841800 | Lsi03g00020 | Lsi-Chr3:394554 | 1.76E-49 | dispersed | |
Lsi03g00020 | Lsi-Chr3:394554 | Lsi03g01817 | Lsi-Chr3:29661765 | 6.76E-66 | dispersed | |
Lsi03g00020 | Lsi-Chr3:394554 | Lsi03g02150 | Lsi-Chr3:32633290 | 4.60E-69 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi03g00020 | - | - | csv:101214235 | 1476.84 |