Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00020 ATGGGTCTAAACGTCAGCTTCAACTTGCTTCCCGGCTCTGATGGTAATTACGGTATTGCTTTTTATGGTTTATTGCAATATGGTATATTAACATTGGGAAATTTGGGGGACGGAAGCAATTTTATATGGTGTTGGAAGTGGATGGAACATAGTTATGGTTTTGAACAGCATGTTGCTCAACAAAGTCGGCGTGATAAGTTAAGAGTTCCGCAGAATTATTTGCGAGTGGGGGAATTATCAAGAAACACTGATGAACAATTGAGTTTTCACAACTCGGATCATTCGGGGCTCGATCTGGATCTTGTTAGAATTCAAAGTTTTAACAAGGATGCGATTTTGCCTCATGATCACTTGTCTTCGTTACCCTCAGAAATGATCAATTTCTCGAGAGATTCCAATGTTTTATCGCACCAAAGGGACATGATGTTGCGTCAAGAACTGGAAAACCCAGCTCAATGCAGTAGACAAATTGTGGCAGATGCCTCTGGTGGAATTGTAAATAATAGTGTTGATTATTGGAAAAGTTCTCATCAAAGCTGTGATTGGGTGGTGAACTGTGGAAGTAATTCTTTTGGAGGTGAAATGTTGAATCAGGAAGTAACTGATTCTACAGTGTATTCACTGAAGCCAACTTGCATTGGATTCCAAACTTCTTCCTCTTTTAACAATCCATCCAACGAGACATTCAATCAGGACGGACAAAAGCGTATAGGAGGAGAATTGCATTTGCCTCCAATTTACCAAAATACCCTTCAGGATGTTGTTACATCAGCCTCTATTCGAACTCAGGGCCTGGAAATGACATCCACTGTGCAGCATAATTTCACTGAAATTAACCAAACTGCTGCTTGTGAAGCCGGTGCGAATGAGCTTGCTCTTCTTCCAGTGTACAGGGATCAGCCAAATGTGTTGCCTTATGACAGTACTGGTTCTTGGACTGATAGAACTTTCTATAATTGCCGCAGCTGGATTGGTGAATTGGGCTCTATTGCTAGGAAAACCGATGAAGAGTTAAGGACTTTTATGAGTGATTCCAATCCACAAGGTCTAGCCCTATCGCTGTCTTCAAATCCACCGTCTAAATTTCCCACCACACAGTTTGAAGAATCAGAGGAATTACAGGAAAGTATCACTGGGTTAAAAAATTCCCAAGAATCCAAACCAGTCAAATCTGAGAGTTTGTGTAGATTACCAAAGCCAACATCTATTGGTAATAAAAATTATGGGAAATCTCTTCAAGATGTGATGGGAGTTCCTGTGAACCCATATAGAAACACAGGTCCTCTTGGCCCCTTTACTGGGTATGCAACCATTTTAAAGAGTTCAAAATTCTTAAAGCCTGCCCAACTGCTGTTAGACGAATTTTGTGGCTCACGTGGTCATTATAAGTTTGTCCAACCATGTGAGGTATTTGAGAAGGCACCTGGGGAAATTGGTGTCTCAGCGGCACTTAATGCATTTAGAAATGAGGTTGCTAAGGAAAATAGTTCGTGTGCAGATGCCTCTACATTCTGCGGTTCGAATGAATCAAATGTTAGTGGAGTTGGGAGCATCTCTTCTGAATCTCATCAACCGGAGTTTCAGCAAAAAAAAGCAAAACTTCTATATATGCTCGAGGAGGTTTGCAGAAGATACAAACAATATCATCAGCAAATGCAAATGGTAGTTTCATCCTTCGAATCAGTAGCTGGTCTTAGTTCTGCGACACCCTACATTTCCCTGGCACTCAAGACAGTCTCAAGACACTTCCGGTCTCTAAAGAATGCCATCTCAGAACAACTGAAGTATCTGAGGAAGGTACTTGGTGAGGATTTGTCATCTCCCTCTGCAGGGACAAGCGGTAGCAAAGGCGATGCAAATTCGGCTAGGTTGAAATACATGGAACAGAGCTTCCAGAAGCAAAAATCTGGCATTGTCAATTTTGGATTCCTCGAATCCCAAAATGCATGGAGGCCACAGAGAGGTTTGCCCGAACGAGCTGTGGCAATTCTTAGAGCCTGGCTCTTTGAGCATTTTCTTCACCCATACCCCACAGACACAGATAAACACATGTTGGCCACTCAAACAGGCCTATCTCGAAACCAGACTTATTTTTGGTGGAAAGTGGTGTTTAATTTGGTGGTTAACACAGTTTGTTTTGCTATTTCGTTTCCTTCTGCTTGCTGTGGCATAAAAGTGTCGAATTGGTTCATAAATGCCCGAGTACGGGTGTGGAAGCCAATGGTTGAAGAGATACACATGCTAGAAACCAAGGGCATGGCAGAAATGAACAACAAAAGACATGGTACGAGAGATGGAAGCTCTACATTAGAAAACACAGCCGGTTGGACCAGTAGTGAACACCAGCCTCTAAAAAACCATGGTGTTCCTAATGAAATGGCTAGTCATCATTTGCAGTGCTTGGGGGTAGATTCCTCAAGTGGCGACAGAAATGGACTCGGCAGCAGCGACCAACAGTGGGATCAAGGCAAACAATCCAAATTGGACAATGGGGTTCAGTCCAACATGGAAGGGGAATTGATGGGGTTCATGCCATATCAGGCCAGTGCGGCTGAGGTTGGAGGACACGGAGCTGTCTCTCTAACATTAGGCCTTCGCCATCGAGTCGAGAGTGCCCACCATCAACAGCAGCGGCATCAATTGCAGCAACAAGATGACCAACTAATACGCCACTATGGAAGCGAAATGATCCATGATTTTGTGGGGTAA 2709 43.19 MGLNVSFNLLPGSDGNYGIAFYGLLQYGILTLGNLGDGSNFIWCWKWMEHSYGFEQHVAQQSRRDKLRVPQNYLRVGELSRNTDEQLSFHNSDHSGLDLDLVRIQSFNKDAILPHDHLSSLPSEMINFSRDSNVLSHQRDMMLRQELENPAQCSRQIVADASGGIVNNSVDYWKSSHQSCDWVVNCGSNSFGGEMLNQEVTDSTVYSLKPTCIGFQTSSSFNNPSNETFNQDGQKRIGGELHLPPIYQNTLQDVVTSASIRTQGLEMTSTVQHNFTEINQTAACEAGANELALLPVYRDQPNVLPYDSTGSWTDRTFYNCRSWIGELGSIARKTDEELRTFMSDSNPQGLALSLSSNPPSKFPTTQFEESEELQESITGLKNSQESKPVKSESLCRLPKPTSIGNKNYGKSLQDVMGVPVNPYRNTGPLGPFTGYATILKSSKFLKPAQLLLDEFCGSRGHYKFVQPCEVFEKAPGEIGVSAALNAFRNEVAKENSSCADASTFCGSNESNVSGVGSISSESHQPEFQQKKAKLLYMLEEVCRRYKQYHQQMQMVVSSFESVAGLSSATPYISLALKTVSRHFRSLKNAISEQLKYLRKVLGEDLSSPSAGTSGSKGDANSARLKYMEQSFQKQKSGIVNFGFLESQNAWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQTYFWWKVVFNLVVNTVCFAISFPSACCGIKVSNWFINARVRVWKPMVEEIHMLETKGMAEMNNKRHGTRDGSSTLENTAGWTSSEHQPLKNHGVPNEMASHHLQCLGVDSSSGDRNGLGSSDQQWDQGKQSKLDNGVQSNMEGELMGFMPYQASAAEVGGHGAVSLTLGLRHRVESAHHQQQRHQLQQQDDQLIRHYGSEMIHDFVG 902
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 394554 398548 + Lsi03G000200.1 Lsi03g00020 657770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00020 902 MobiDBLite consensus disorder prediction 805 829 - -
Lsi03g00020 902 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 82 699 - -
Lsi03g00020 902 Pfam Homeobox KN domain 667 736 IPR008422 GO:0003677|GO:0006355
Lsi03g00020 902 MobiDBLite consensus disorder prediction 353 396 - -
Lsi03g00020 902 SMART prehox3 433 592 IPR006563 -
Lsi03g00020 902 MobiDBLite consensus disorder prediction 767 783 - -
Lsi03g00020 902 SUPERFAMILY Homeodomain-like 642 700 IPR009057 -
Lsi03g00020 902 Pfam Associated with HOX 438 591 IPR006563 -
Lsi03g00020 902 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 726 869 - -
Lsi03g00020 902 SMART HOX_1 650 744 IPR001356 GO:0003677
Lsi03g00020 902 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 8 726 869 - -
Lsi03g00020 902 CDD homeodomain 650 741 IPR001356 GO:0003677
Lsi03g00020 902 Gene3D - 653 745 - -
Lsi03g00020 902 MobiDBLite consensus disorder prediction 353 390 - -
Lsi03g00020 902 MobiDBLite consensus disorder prediction 757 783 - -
Lsi03g00020 902 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 8 82 699 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01477 Lsi-Chr1:12841800 Lsi03g00020 Lsi-Chr3:394554 1.76E-49 dispersed
Lsi03g00020 Lsi-Chr3:394554 Lsi03g01817 Lsi-Chr3:29661765 6.76E-66 dispersed
Lsi03g00020 Lsi-Chr3:394554 Lsi03g02150 Lsi-Chr3:32633290 4.60E-69 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00020 - - csv:101214235 1476.84