Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00048 ATGGCCATGGCTATGGCCCATCACAGGGAGAGTGGCGATGGGGGTATCAATGGCCACCTTGATAGCACTGGGAAGTATGTCCGTTACACGACGGAGCAAGTGGAGGCTCTTGAGCGAGTCTATGCGGAATGTCCTAAACCAAGCTCTTTGCGCCGCCAGCAGCTGGTTCGTGATTGCCCCATTTTAGCCAACATCGAGCCCAAACAGATCAAAGTCTGGTTCCAGAACCGCAGGTATTTGGAACATGATGGGGTTCTTTTTCTTTTGCTTATTCTTCTTTTGAAATCATTGATGGAGGGTATTGCCATTTGCCACTACATTTTGCTTACTGTGGAATCTCCATTGTTGGTGAAGTTTAGTCGTGTTTGTTGGCTTTTTTTGGGAGGTAGGATGTTTTTTTTATGGGGTTTTGTTGGTTTTTGTAGATGTAGGGAGAAACAAAGAAAAGAGGCTTCTCGTTTACAGTCACTAAACAGTAAATTGACGGCCATGAACAAGCTGTTGATGGAGGAGAATGATAGGTTGCAGAAGCAAGTGTCTCAGCTCGTCTGTGAGAATGGGTATATGCGCCAACATTTGCATACTGCTAATACACCAGCAGCAACAACTACTGATGCAGCTTGTGACTCAGTGGCTACTACCCATCAACATTCACTTAGAGATGCTAGTAGCCCTGCTGGACTCTTGTCTATTGCAGAGGAGATTTTGGCAGCCTTCCTGTCAAAGGCTACGGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTGGGAATCTTTGCCATTTCACAAAGTTGCAGTGGAGTGGCCGCTCGAGCTTGTGGTCTTATTGCAGAGATCCTAAAAGATCGCCCATCTTGGTTTCGTGATTGCCGGAGCCTTGAAGTCTTTACAACATTTCCCACTGGTGATGGTGGAACAATAGAACTTGTTTATACGCAGGTTTACGCTCCTACTACATTAGCGCCTGCGCGAGATTTTTGGACTCTAAGATACACCAGAACTTTAGAAAATGGCAATCTTGTGGTTTGTGAGAGATCGCTGTCTGGGTCTGGCACTGGGCCAAATGCAGCTTCTGCTTCTCAATTTGTGAGAGCCGAAATGCTTCCCAGTGGCTATTTGATTCGTCCATGCGAGGGGGGAGGTTCGATCATCCACATTGTAGACCATCTAAATCTTGAGCCTTGGGGTGTTCCAGAGGTAGTACGACCACTTTACGAATCATCAAAGGCCGTTGCCCAGAAAATGACTATAGCAGCTCTTCGCTACGTTAGGCAAATCGCTCAGGAGACAAGTGGTGAAGTAGTATACAGTTTAGGCAGGCAACCGGCTGTTTTGCGAACTTTTAGCCAAAGATTGAGCAGAGGATTTAATGATGCTGTCAATGGATTCAATGATGATGGGTGGTCTTTGATCAATTGTGATGGAGCTGAAGATGTGACCCTTGCCATAAATTCAAGCAAGAATCTAAATACATCATATGATCCAGGCAATTCTCTTGCATTCCACGGTGGGATCCTTTGTGCAAAGGCTTCCATGCTTCTCCAAAATGTTCCTCCCATTGCTCTAATTCGCTTCTTGAGGGAGCATCGGTCCGAGTGGGCTGATTTCAATGTTGATGCCTACTCTGCTGCATCGCTAAAAACTGGTTCATATGCATACCCGGGCATGAGACCGACAAGATTTACAGGAAGCCAAATCATCATGCCACTCGGTCATACAATTGAACAAGAAGAGTTGCTTGAAGTTGTAAGACTTGAAAGTCACCCTCTTGCTCAAGAAGATGCTTTTATGTCCCGGGACGTTCATCTCTTGCAGATGTGTACTGGAATCGATGAGAATGCTGTTGGGGCGTGTTCTGAACTTGTGTTTGCTCCGATCGATGAGATGTTTCCTGATGATGCTGTGCTGCTGGCTTCTGGTTTCAGGATCATTCCATTACATTCTAAAACAAGTGACACAAAAGACACATGGAACTCAAATAGGACTCTGGATCTCACTTCCAGTCTTGAAGTTGGCTCATCTGCTTCTCAAGATGCTGCTGCTGCTGCATCAACTTCTAACTTCAGATCGGTTTTGACCATTGCTTTCCAGTTCCCGTTCGGTAGCAATTTGCAGGATGACGTTGCAGCAATGGCTCGACAGTATGTCCGGAGTGTCGTTTCATCCGTGCAGAGGGTTGCAGTTGCCATATCTCCCTCTGGTTTAAGCTCGCCATCAGAGCCAAAGCTATCATCTGCTTGTCCAGAAGCTCTTACACTTGCTCGATGGATCTGCCATAGCTACAGGTTATTTCTCTTTCCTTAA 2325 46.37 MAMAMAHHRESGDGGINGHLDSTGKYVRYTTEQVEALERVYAECPKPSSLRRQQLVRDCPILANIEPKQIKVWFQNRRYLEHDGVLFLLLILLLKSLMEGIAICHYILLTVESPLLVKFSRVCWLFLGGRMFFLWGFVGFCRCREKQRKEASRLQSLNSKLTAMNKLLMEENDRLQKQVSQLVCENGYMRQHLHTANTPAATTTDAACDSVATTHQHSLRDASSPAGLLSIAEEILAAFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLIAEILKDRPSWFRDCRSLEVFTTFPTGDGGTIELVYTQVYAPTTLAPARDFWTLRYTRTLENGNLVVCERSLSGSGTGPNAASASQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEPWGVPEVVRPLYESSKAVAQKMTIAALRYVRQIAQETSGEVVYSLGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWSLINCDGAEDVTLAINSSKNLNTSYDPGNSLAFHGGILCAKASMLLQNVPPIALIRFLREHRSEWADFNVDAYSAASLKTGSYAYPGMRPTRFTGSQIIMPLGHTIEQEELLEVVRLESHPLAQEDAFMSRDVHLLQMCTGIDENAVGACSELVFAPIDEMFPDDAVLLASGFRIIPLHSKTSDTKDTWNSNRTLDLTSSLEVGSSASQDAAAAASTSNFRSVLTIAFQFPFGSNLQDDVAAMARQYVRSVVSSVQRVAVAISPSGLSSPSEPKLSSACPEALTLARWICHSYRLFLFP 774
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 754696 760437 - Lsi03G000480.1 Lsi03g00048 657798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00048 774 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 141 772 - -
Lsi03g00048 774 CDD bZIP 142 180 - -
Lsi03g00048 774 CDD homeodomain 25 79 IPR001356 GO:0003677
Lsi03g00048 774 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 141 772 IPR044830 GO:0003700
Lsi03g00048 774 Pfam START domain 231 432 IPR002913 GO:0008289
Lsi03g00048 774 SMART HOX_1 22 88 IPR001356 GO:0003677
Lsi03g00048 774 ProSiteProfiles START domain profile. 221 442 IPR002913 GO:0008289
Lsi03g00048 774 Coils Coil 154 185 - -
Lsi03g00048 774 Gene3D - 19 83 - -
Lsi03g00048 774 SMART START_1 230 433 IPR002913 GO:0008289
Lsi03g00048 774 ProSiteProfiles 'Homeobox' domain profile. 20 78 IPR001356 GO:0003677
Lsi03g00048 774 SUPERFAMILY Homeodomain-like 23 79 IPR009057 -
Lsi03g00048 774 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 81 IPR044830 GO:0003700
Lsi03g00048 774 Gene3D - 260 439 IPR023393 -
Lsi03g00048 774 SUPERFAMILY Bet v1-like 230 435 - -
Lsi03g00048 774 CDD START_ArGLABRA2_like 225 434 - -
Lsi03g00048 774 Pfam Homeodomain 26 79 IPR001356 GO:0003677
Lsi03g00048 774 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 1 81 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00048 Lsi-Chr3:754696 Lsi04g02325 Lsi-Chr4:30462708 1.14E-25 dispersed
Lsi03g00048 Lsi-Chr3:754696 Lsi01g00085 Lsi-Chr1:832790 1.29E-28 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24947 PF01852 START 1.40E-42 CL0209 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00048 K09338 - tcc:18590882 1015.76