Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi03g00054 | ATGATTTCAAATTCTCAAATGCTTTCTTTACCTTCACAACATCCTTTGGTTTCATCTTCTAATGATCATCATGAAACCCTAGATAACCTTCTTTCTTCTTATTCTCAATCAAGCAACTCTCTCCTTTATAATCTCTCAATTTTGAAGGAGAAACTCCATCAAATTCAATCTGTTGTCAACATAGCCATCTACAACCTTCAAACCTCGACCGAGTCTCTGCCCTCGGCCTCGGCCCTGACCCCGTCCCCATCCCCGGTGGCAACTGCGGTCGTCAACTCTTTGATTCAAGAACTCATCATGGCTGCTTCATCCATGTTGTTCACATGTCAACAAATGGATAACCTCGTCGTGAACGCCTCCTTACACAACAACAGCGTCGATAACAATCTCCACGGTCAACGCCACCACCACCGTCAAGGCCCCGTTGACGATGACAATCGACGATCCAACACCCTTCTCGACATGGCCAACAACCATCATCACCAACATCAAGATTGGTACAGCATGACGACATCTACTAATTATAATAACGACGACGACAACAACAACAATAGAACAATGACAACAAAAACAACACAAGATCATCGAAATTCGATCAATATCGTCGAGCTAGACGCTTCGAATCTTCTAGCAAAATACACCCATTATTGTCAAATTTGCGGGAAAGGGTTCAAGCGAGACGCGAACTTGAGAATGCACATGCGAGCGCACGGCGACGAGTACAAAGCGAGCGGAGCATTGTGCAATCCAGAGAAGAACCATAGAAGGGAGTTGAATAATATAAGCAAGATGGGGACCAAATATTCATGTCCACAAGAAGGGTGCAGATGGAACCAAAAACATGTGAAGTTTCAGCCATTGAAATCATTGATTTGTGTGAAAAATCACTTCAAAAGAACTCATTGCCCCAAAATGTATGTTTGTAAACTGTGTAGTAGGAAGAAATTTTCAGTGCTTTCTGATTTGAGGACTCATGAGAAGCACTGTGGAAATGTGAAATGGCTATGTTCTTGTGGAACCACATTTTCCAGGAAAGATAAGCTCATGGGACATGTTGCTTTGTTCGTCGGTCATGCTCCGGCCATCGGTTCGTCGACAAAATTTTCGGGAAAACAGGAAGAACATCATCAGTATGTTCATTCATTCTAA | 1149 | 42.99 | MISNSQMLSLPSQHPLVSSSNDHHETLDNLLSSYSQSSNSLLYNLSILKEKLHQIQSVVNIAIYNLQTSTESLPSASALTPSPSPVATAVVNSLIQELIMAASSMLFTCQQMDNLVVNASLHNNSVDNNLHGQRHHHRQGPVDDDNRRSNTLLDMANNHHHQHQDWYSMTTSTNYNNDDDNNNNRTMTTKTTQDHRNSINIVELDASNLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKASGALCNPEKNHRRELNNISKMGTKYSCPQEGCRWNQKHVKFQPLKSLICVKNHFKRTHCPKMYVCKLCSRKKFSVLSDLRTHEKHCGNVKWLCSCGTTFSRKDKLMGHVALFVGHAPAIGSSTKFSGKQEEHHQYVHSF | 382 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 850153 | 851301 | + | Lsi03G000540.1 | Lsi03g00054 | 657804 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi03g00054 | 382 | Pfam | Zinc finger, C2H2 type | 215 | 237 | IPR013087 | - | |
Lsi03g00054 | 382 | PANTHER | OS08G0562300 PROTEIN | 23 | 375 | - | - | |
Lsi03g00054 | 382 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 217 | 237 | IPR013087 | - | |
Lsi03g00054 | 382 | MobiDBLite | consensus disorder prediction | 127 | 150 | - | - | |
Lsi03g00054 | 382 | Gene3D | Classic Zinc Finger | 211 | 239 | - | - | |
Lsi03g00054 | 382 | SUPERFAMILY | beta-beta-alpha zinc fingers | 213 | 251 | IPR036236 | - | |
Lsi03g00054 | 382 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Lsi03g00054 | 382 | PANTHER | PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 | 23 | 375 | IPR044300 | GO:0010044|GO:0010447 | |
Lsi03g00054 | 382 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 215 | 242 | IPR013087 | - | |
Lsi03g00054 | 382 | MobiDBLite | consensus disorder prediction | 129 | 150 | - | - | |
Lsi03g00054 | 382 | Gene3D | Classic Zinc Finger | 304 | 354 | - | - | |
Lsi03g00054 | 382 | SMART | c2h2final6 | 215 | 237 | IPR013087 | - | |
Lsi03g00054 | 382 | SMART | c2h2final6 | 306 | 328 | IPR013087 | - | |
Lsi03g00054 | 382 | SMART | c2h2final6 | 268 | 301 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g01944 | Lsi-Chr2:25337855 | Lsi03g00054 | Lsi-Chr3:850153 | 1.52E-75 | dispersed | |
Lsi02g02581 | Lsi-Chr2:32280466 | Lsi03g00054 | Lsi-Chr3:850153 | 2.49E-21 | dispersed | |
Lsi03g00054 | Lsi-Chr3:850153 | Lsi03g02034 | Lsi-Chr3:31704220 | 3.75E-23 | dispersed | |
Lsi03g00054 | Lsi-Chr3:850153 | Lsi08g01410 | Lsi-Chr8:22345397 | 5.41E-25 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24948 | PF00096 | zf-C2H2 | 9.80E-05 | CL0361 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi03g00054 | - | - | csv:101203636 | 645.58 |