Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00054 ATGATTTCAAATTCTCAAATGCTTTCTTTACCTTCACAACATCCTTTGGTTTCATCTTCTAATGATCATCATGAAACCCTAGATAACCTTCTTTCTTCTTATTCTCAATCAAGCAACTCTCTCCTTTATAATCTCTCAATTTTGAAGGAGAAACTCCATCAAATTCAATCTGTTGTCAACATAGCCATCTACAACCTTCAAACCTCGACCGAGTCTCTGCCCTCGGCCTCGGCCCTGACCCCGTCCCCATCCCCGGTGGCAACTGCGGTCGTCAACTCTTTGATTCAAGAACTCATCATGGCTGCTTCATCCATGTTGTTCACATGTCAACAAATGGATAACCTCGTCGTGAACGCCTCCTTACACAACAACAGCGTCGATAACAATCTCCACGGTCAACGCCACCACCACCGTCAAGGCCCCGTTGACGATGACAATCGACGATCCAACACCCTTCTCGACATGGCCAACAACCATCATCACCAACATCAAGATTGGTACAGCATGACGACATCTACTAATTATAATAACGACGACGACAACAACAACAATAGAACAATGACAACAAAAACAACACAAGATCATCGAAATTCGATCAATATCGTCGAGCTAGACGCTTCGAATCTTCTAGCAAAATACACCCATTATTGTCAAATTTGCGGGAAAGGGTTCAAGCGAGACGCGAACTTGAGAATGCACATGCGAGCGCACGGCGACGAGTACAAAGCGAGCGGAGCATTGTGCAATCCAGAGAAGAACCATAGAAGGGAGTTGAATAATATAAGCAAGATGGGGACCAAATATTCATGTCCACAAGAAGGGTGCAGATGGAACCAAAAACATGTGAAGTTTCAGCCATTGAAATCATTGATTTGTGTGAAAAATCACTTCAAAAGAACTCATTGCCCCAAAATGTATGTTTGTAAACTGTGTAGTAGGAAGAAATTTTCAGTGCTTTCTGATTTGAGGACTCATGAGAAGCACTGTGGAAATGTGAAATGGCTATGTTCTTGTGGAACCACATTTTCCAGGAAAGATAAGCTCATGGGACATGTTGCTTTGTTCGTCGGTCATGCTCCGGCCATCGGTTCGTCGACAAAATTTTCGGGAAAACAGGAAGAACATCATCAGTATGTTCATTCATTCTAA 1149 42.99 MISNSQMLSLPSQHPLVSSSNDHHETLDNLLSSYSQSSNSLLYNLSILKEKLHQIQSVVNIAIYNLQTSTESLPSASALTPSPSPVATAVVNSLIQELIMAASSMLFTCQQMDNLVVNASLHNNSVDNNLHGQRHHHRQGPVDDDNRRSNTLLDMANNHHHQHQDWYSMTTSTNYNNDDDNNNNRTMTTKTTQDHRNSINIVELDASNLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKASGALCNPEKNHRRELNNISKMGTKYSCPQEGCRWNQKHVKFQPLKSLICVKNHFKRTHCPKMYVCKLCSRKKFSVLSDLRTHEKHCGNVKWLCSCGTTFSRKDKLMGHVALFVGHAPAIGSSTKFSGKQEEHHQYVHSF 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 850153 851301 + Lsi03G000540.1 Lsi03g00054 657804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00054 382 Pfam Zinc finger, C2H2 type 215 237 IPR013087 -
Lsi03g00054 382 PANTHER OS08G0562300 PROTEIN 23 375 - -
Lsi03g00054 382 ProSitePatterns Zinc finger C2H2 type domain signature. 217 237 IPR013087 -
Lsi03g00054 382 MobiDBLite consensus disorder prediction 127 150 - -
Lsi03g00054 382 Gene3D Classic Zinc Finger 211 239 - -
Lsi03g00054 382 SUPERFAMILY beta-beta-alpha zinc fingers 213 251 IPR036236 -
Lsi03g00054 382 MobiDBLite consensus disorder prediction 1 22 - -
Lsi03g00054 382 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 23 375 IPR044300 GO:0010044|GO:0010447
Lsi03g00054 382 ProSiteProfiles Zinc finger C2H2 type domain profile. 215 242 IPR013087 -
Lsi03g00054 382 MobiDBLite consensus disorder prediction 129 150 - -
Lsi03g00054 382 Gene3D Classic Zinc Finger 304 354 - -
Lsi03g00054 382 SMART c2h2final6 215 237 IPR013087 -
Lsi03g00054 382 SMART c2h2final6 306 328 IPR013087 -
Lsi03g00054 382 SMART c2h2final6 268 301 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01944 Lsi-Chr2:25337855 Lsi03g00054 Lsi-Chr3:850153 1.52E-75 dispersed
Lsi02g02581 Lsi-Chr2:32280466 Lsi03g00054 Lsi-Chr3:850153 2.49E-21 dispersed
Lsi03g00054 Lsi-Chr3:850153 Lsi03g02034 Lsi-Chr3:31704220 3.75E-23 dispersed
Lsi03g00054 Lsi-Chr3:850153 Lsi08g01410 Lsi-Chr8:22345397 5.41E-25 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24948 PF00096 zf-C2H2 9.80E-05 CL0361 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00054 - - csv:101203636 645.58