Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00068 ATGCTTCTTGATCTTCTGGAGGATCCGCAAGAAATACGACGCATCTGTATTATGGGAAGAAATTGCACGCTTAATAAAAGAAATGATGATGTGGAGTGCCCTCTCCCTTTGGATAAGCAGATTGCTGATGATGCGAATCTTGTCATGGTCAGGCTGAAAGGCTTCTGGATTCAGCAAAAGAAATGGAAGATTCAATTGCTCTCGCGGCGACTAGAGGTTAGCAGAGTGGAATTGCTTCTCCAAGTTGGGACATTTTGTGTGGCAGTTGGTGCTTTAGTTGCAGGAATATTCGGAATGAACTTACGATCATACCTTGAAGAACACGTGTTTGCCTTCTGGTTAACAACAGCTGGGATAATTGTTGGCGCTGTCGTGGCATTCTTTCTCATGTATTCATATCTCAGAGCTAGGAGAATCCTATAG 423 43.5 MLLDLLEDPQEIRRICIMGRNCTLNKRNDDVECPLPLDKQIADDANLVMVRLKGFWIQQKKWKIQLLSRRLEVSRVELLLQVGTFCVAVGALVAGIFGMNLRSYLEEHVFAFWLTTAGIIVGAVVAFFLMYSYLRARRIL 140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 968110 972422 - Lsi03G000680.1 Lsi03g00068 657818

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00068 140 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 76 131 IPR045863 -
Lsi03g00068 140 Gene3D Magnesium transport protein CorA, transmembrane region 68 139 - -
Lsi03g00068 140 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 1 45 IPR039204 -
Lsi03g00068 140 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 64 140 IPR039204 -
Lsi03g00068 140 PANTHER MG2+ TRANSPORTER PROTEIN, CORA-LIKE/ZINC TRANSPORT PROTEIN ZNTB-RELATED 1 45 - -
Lsi03g00068 140 PANTHER MG2+ TRANSPORTER PROTEIN, CORA-LIKE/ZINC TRANSPORT PROTEIN ZNTB-RELATED 64 140 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00068 K16075 MRS2, MFM1; magnesium transporter - csv:101219314 205.297
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00068 Lsi-Chr3:968110 Lsi05g00158 Lsi-Chr5:2309975 2.40E-08 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi03g01255 . 1 447 MRS2 Gene Family AT1G16010 85.0 6.6e-207 716.8
Lsi08g00899 . 6 380 MRS2 Gene Family AT1G16010 52.6 4.1e-108 388.7
Lsi09g01276 . 1 410 MRS2 Gene Family AT5G64560 63.1 4.0e-128 454.9
Lsi05g00972 . 662 969 MRS2 Gene Family AT5G64560 59.5 1.8e-91 333.2
Lsi03g00598 . 244 730 MRS2 Gene Family AT3G19640 62.3 1.7e-147 519.6
Lsi05g00158 . 54 473 MRS2 Gene Family AT3G58970 65.1 1.7e-138 489.6
Lsi08g00899 . 6 380 MRS2 Gene Family AT2G03620 68.6 2.0e-136 482.6
Lsi03g01255 . 13 447 MRS2 Gene Family AT2G03620 52.8 3.4e-112 402.1
Lsi09g01276 . 1 372 MRS2 Gene Family AT5G09690 56.7 5.3e-97 351.3
Lsi05g00972 . 662 957 MRS2 Gene Family AT5G09690 57.8 3.2e-86 315.5
Lsi03g01255 . 40 383 MRS2 Gene Family AT5G09690 50.3 5.5e-78 288.1
Lsi09g01276 . 23 321 MRS2 Gene Family AT5G09720 55.5 1.9e-72 269.6
Lsi05g00972 . 696 945 MRS2 Gene Family AT5G09720 57.7 3.6e-68 255.4
Lsi03g01255 . 1 447 MRS2 Gene Family AT1G80900 83.2 1.2e-200 696.0
Lsi08g00899 . 6 380 MRS2 Gene Family AT1G80900 54.2 1.3e-106 383.6
Lsi03g00069 . 116 255 MRS2 Gene Family AT5G22830 68.6 6.1e-46 182.2
Lsi03g00068 . 1 139 MRS2 Gene Family AT5G22830 61.4 4.4e-44 176.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004489 1 3 0 1 1 1 3 1 1 1 1 1 2 1 2 3 1 2 2 1 2 1 1 1 1 2 1 1 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g00068 Lsi_Chr03 FPKM 2.541803 3.517391 6.11705 6.206126 10.082099 9.129813 10.495842 1.916914 1.844919 2.09258