Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00068 ATGCTTCTTGATCTTCTGGAGGATCCGCAAGAAATACGACGCATCTGTATTATGGGAAGAAATTGCACGCTTAATAAAAGAAATGATGATGTGGAGTGCCCTCTCCCTTTGGATAAGCAGATTGCTGATGATGCGAATCTTGTCATGGTCAGGCTGAAAGGCTTCTGGATTCAGCAAAAGAAATGGAAGATTCAATTGCTCTCGCGGCGACTAGAGGTTAGCAGAGTGGAATTGCTTCTCCAAGTTGGGACATTTTGTGTGGCAGTTGGTGCTTTAGTTGCAGGAATATTCGGAATGAACTTACGATCATACCTTGAAGAACACGTGTTTGCCTTCTGGTTAACAACAGCTGGGATAATTGTTGGCGCTGTCGTGGCATTCTTTCTCATGTATTCATATCTCAGAGCTAGGAGAATCCTATAG 423 43.5 MLLDLLEDPQEIRRICIMGRNCTLNKRNDDVECPLPLDKQIADDANLVMVRLKGFWIQQKKWKIQLLSRRLEVSRVELLLQVGTFCVAVGALVAGIFGMNLRSYLEEHVFAFWLTTAGIIVGAVVAFFLMYSYLRARRIL 140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 968110 972422 - Lsi03G000680.1 Lsi03g00068 657818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00068 140 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 76 131 IPR045863 -
Lsi03g00068 140 Gene3D Magnesium transport protein CorA, transmembrane region 68 139 - -
Lsi03g00068 140 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 1 45 IPR039204 -
Lsi03g00068 140 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 64 140 IPR039204 -
Lsi03g00068 140 PANTHER MG2+ TRANSPORTER PROTEIN, CORA-LIKE/ZINC TRANSPORT PROTEIN ZNTB-RELATED 1 45 - -
Lsi03g00068 140 PANTHER MG2+ TRANSPORTER PROTEIN, CORA-LIKE/ZINC TRANSPORT PROTEIN ZNTB-RELATED 64 140 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00068 Lsi-Chr3:968110 Lsi05g00158 Lsi-Chr5:2309975 2.40E-08 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00068 K16075 - csv:101219314 205.297