Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00070 ATGTCTCGCCGAGGCGGTGGTGGTGGTGGCGGTCGTGGTTCAGGTGGTCGTGGAGGACAGCCGTCTCCGGCTATATCTCGCGGTGGCGGCGGCGTTGGCGGCAGAGGTGGCAGTGGAAGAGGTGGACGCGGCGGTGGAGGGAGAGATGGAGGTAGGGTAGGTCATCCGACTCCTCAGCAGTTTCCTTCTCCGACTCCTCAGTCTACTCCGGTTGCCTCCCCTCGTCCTCCTCAGCCTTCTCCGGTTGCTTCTCATCCTCCTCCTCCCCAGACATCAACGGGAGCATCTTCTTCTTCCTCATCAGGTACTGATACTCACTCACAGCCTGAGGTTTCGGGGATCGAGGCACAAGTGGAGAAGATGACACTGACGCCGCAGAATGTTCCGCCGTCTTCATCTAAAAATTTGGCTGTGGCGAAGAGGCCGGGATATGGAACCATTGGGCACAAACTTGTCGTTCGAGCTAATCATTTTCTGGTTCAAGTTGCAGACAAAGATCTCTACCATTATGATGTTTCTATTACACCTGAGGTTACATCCAAAAAGGTCTGCCGAGATATAATAAACCAGCTTGCAACAATGTATAGAGAGTCTCATTTAGGTGGAAGATATATAGCATATGATGGAGGAAAAAGTGTTTATGTTGCTGGTCAACTTCCATTTACCTCCAAAGAGTTCATGATTAAATTAGTTCGTAAAGATGATGCTGGGTCTTCCCAACCAACAAGGAAAGAACGTGAGTTCAAAGTATCTATCAAATTTGCTTCCAAGCCAGATCTCCATCATCTACAACAGTTTTTACACGGATGGCAGCGTGATGCTCCACAAGAGACTATACAAGTTCTTGATGTTGTTTTGAGAACAAAACCATCTTTCGATTACACAGTTGTTGGAAGGTCATTTTTCTCGCTTACTTTGGGGGAACCAGGTGAACTCGGTAATGGTGTCGAGTATTGGAGGGGATATTACCAAAGTCTACGACCTGTACAAATGGGTCTCTCTTTGAATAAAGATGTGTCAGCTAGGTCATTTTATGAACCAATATGTGTGACAGACTATGTTGCTAAACACTTCAACCTAAGAAATTTCTCGAAGCCAATATCTGATCAGGATTGTCGCAAGATCCGAAGGGTACTTAAAGGTGTGAAGGTGGCATTAACGTGTAGGGAGCATGCCAGGACCTACAAAATTACTGGGATATCATCAGAGCCTGTAAACAGATTAATGATGATTGATAGAATTTCGTTATCTAATGAAGAACATTGTTTGAACTCTTCCTCCACTATTGCAAAGATTGTTTCTGGGATTCTAAGGGATTGGAAGCAGTTTCAACTAGTTATTTTGGTGTTTATTGTTCTTATCTATGTTGTAAATGGGTTTACTCTTGATGATCAGAGAACCCGAATCTCTGTTGCGCAATACTTTCGTGAAAAATATGGTGTTATGCTCAGATTTCCATCTCTACCGGCTATACAAGCTGGTAATGATGCAAAGCCCATCTATTTGCCTATGGAGGTTTGTAGGATTGTTGGTGGGCAGAGATATACCAAAAAGTTGAATGAACGCCAAGTAACTGAGATGTTAAGAGCAACTTGTCAGAGGCCTCATGAGAGGGCAGACAGTGTAAAGAAGATGGTTGAGAAGAATGATTATTCTAAAGATGAAATTGTTAGGGATTTTGGCATTGATGTTGTACCAGTGCTATGTGATGTTGATGCTCGTGTTTTGCCGTCCCCAATGGTATTTCTAACAATCTTAACTCTCAAATATCATGAAACTGGCAAAGAATCAAGAGTTGATCCAAGGATGGGTCAGTGGAATATGATTAATAAGAAAATGATCAATGGAGGTAGGGTTGATTATTGGGGCTGCGTGAACTTCTCTTCACGGTTGGATCCAGGCTTGCCATCTGAATTTTGCAACCAGTTGGTTAGCATGTGCAATAGCAAAGGAATGGTTTTCAACCCTACTCCGCTGTTTCCTGTACGTACTGCACATGCAAATCAAATTGATGGTGTGCTTAGAGACATTCATAGTCATTCTGTGAAAAGTTTGGGACCCCAGGGCAAGTCTCTTCAGTTGCTCATAATCATTTTACCTGATGTTTCTGGTTCCTATGGGAAGATCAAAAGGATATGTGAGACTGAGCTTGGAATTGTTTCACAATGTTGCCAGCCTAGGCAGGCACAAAAACTAAACAAGCAGTACTTTGAAAATGTGGCCCTCAAAATTAACGTTAAGGTTGGGGGAAGAAACAATGTCCTAAATGATGCTATTCAGCGAAAAATTCCTCTTGTTACGGATCGGCCTACGATAATCTTTGGAGCAGATGTGACACACCCGCAACCAGGAGAGGACTCCAGTGCTTCAATAGCAGCTGTTGTTGCCTCAATGGACTGGCCTGAGGTAACGAAGTACAGAGGAATTGTTTCAGCTCAGGCTCACCGTGAAGAAATTATACAAGATTTGTACAAAGAGATTCAAGATCCTCAAAAAGGGTTGGTGCGTGCAGGGATGATTAGAGAGCTGTTCATTGCTTTTAGAAGGTCAACGAATATGAAACCGCACAGAATAATATTCTACAGAGATGGCGTAAGTGAAGGACAGTTCTCTCAAGTTCTATTTTATGAGGTTGATGCAATCAGGAAGGCATGTGCCTCGCTTGAAGATGGTTACCAGCCTCCAATAACCTTTGTAGTGGTGCAAAAGAGACATCATACCCGTCTTTTCCCCATTGGTCGGGATACTGATCGAAGTGGAAACATCCTTCCAGGTACTGTTGTCGATACGAAAATTTGTCATCCAACTGAATTTGATTTCTATTTAAACAGCCATGCTGGCATTCAGGGGACAAGTAGACCAACACATTATCACGTTTTATATGATGAAAACAAATTCAGTGCCGATGCAATGCAAATGCTTACTAATAATCTATGCTACACGTATGCAAGGTGCACACGGTCTGTTTCCATTGTTCCACCAGCATACTATGCTCATCTTGCAGCCTTTCGTGCTCGTTATTATATGGAGGGTGATTCATCCGATTGTGGTTCCACGAGTTCGGGTGGTGGGAATGTAGAGATTCAACGGCTGCCGAGCATAAAAGAAAATGTGAAGGATGTCATGTTTTACTGTTGA 3138 43.56 MSRRGGGGGGGRGSGGRGGQPSPAISRGGGGVGGRGGSGRGGRGGGGRDGGRVGHPTPQQFPSPTPQSTPVASPRPPQPSPVASHPPPPQTSTGASSSSSSGTDTHSQPEVSGIEAQVEKMTLTPQNVPPSSSKNLAVAKRPGYGTIGHKLVVRANHFLVQVADKDLYHYDVSITPEVTSKKVCRDIINQLATMYRESHLGGRYIAYDGGKSVYVAGQLPFTSKEFMIKLVRKDDAGSSQPTRKEREFKVSIKFASKPDLHHLQQFLHGWQRDAPQETIQVLDVVLRTKPSFDYTVVGRSFFSLTLGEPGELGNGVEYWRGYYQSLRPVQMGLSLNKDVSARSFYEPICVTDYVAKHFNLRNFSKPISDQDCRKIRRVLKGVKVALTCREHARTYKITGISSEPVNRLMMIDRISLSNEEHCLNSSSTIAKIVSGILRDWKQFQLVILVFIVLIYVVNGFTLDDQRTRISVAQYFREKYGVMLRFPSLPAIQAGNDAKPIYLPMEVCRIVGGQRYTKKLNERQVTEMLRATCQRPHERADSVKKMVEKNDYSKDEIVRDFGIDVVPVLCDVDARVLPSPMVFLTILTLKYHETGKESRVDPRMGQWNMINKKMINGGRVDYWGCVNFSSRLDPGLPSEFCNQLVSMCNSKGMVFNPTPLFPVRTAHANQIDGVLRDIHSHSVKSLGPQGKSLQLLIIILPDVSGSYGKIKRICETELGIVSQCCQPRQAQKLNKQYFENVALKINVKVGGRNNVLNDAIQRKIPLVTDRPTIIFGADVTHPQPGEDSSASIAAVVASMDWPEVTKYRGIVSAQAHREEIIQDLYKEIQDPQKGLVRAGMIRELFIAFRRSTNMKPHRIIFYRDGVSEGQFSQVLFYEVDAIRKACASLEDGYQPPITFVVVQKRHHTRLFPIGRDTDRSGNILPGTVVDTKICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENKFSADAMQMLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYMEGDSSDCGSTSSGGGNVEIQRLPSIKENVKDVMFYC 1045
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 985293 993261 - Lsi03G000700.1 Lsi03g00070 657820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00070 1045 Pfam N-terminal domain of argonaute 151 286 IPR032474 -
Lsi03g00070 1045 Pfam Argonaute linker 2 domain 537 581 IPR032472 -
Lsi03g00070 1045 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 48 407 - -
Lsi03g00070 1045 PANTHER PROTEIN ARGONAUTE 1A 460 1029 - -
Lsi03g00070 1045 PANTHER PROTEIN ARGONAUTE 1A 48 407 - -
Lsi03g00070 1045 MobiDBLite consensus disorder prediction 1 111 - -
Lsi03g00070 1045 Pfam PAZ domain 460 528 IPR003100 GO:0005515
Lsi03g00070 1045 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 460 1029 - -
Lsi03g00070 1045 MobiDBLite consensus disorder prediction 89 111 - -
Lsi03g00070 1045 ProSiteProfiles Piwi domain profile. 694 1010 IPR003165 GO:0003676
Lsi03g00070 1045 SMART Piwi_a_2 694 1010 IPR003165 GO:0003676
Lsi03g00070 1045 Gene3D paz domain 342 515 - -
Lsi03g00070 1045 MobiDBLite consensus disorder prediction 59 88 - -
Lsi03g00070 1045 CDD PAZ_argonaute_like 347 510 - -
Lsi03g00070 1045 Pfam Mid domain of argonaute 601 678 IPR032473 -
Lsi03g00070 1045 CDD Piwi_ago-like 555 1009 IPR045246 -
Lsi03g00070 1045 ProSiteProfiles PAZ domain profile. 460 511 IPR003100 GO:0005515
Lsi03g00070 1045 Pfam Piwi domain 696 1009 IPR003165 GO:0003676
Lsi03g00070 1045 SUPERFAMILY PAZ domain 344 551 IPR036085 GO:0005515
Lsi03g00070 1045 SMART DUF1785_2 295 347 IPR014811 -
Lsi03g00070 1045 Gene3D - 576 757 - -
Lsi03g00070 1045 Pfam Argonaute linker 1 domain 297 346 IPR014811 -
Lsi03g00070 1045 SUPERFAMILY Ribonuclease H-like 690 1011 IPR012337 -
Lsi03g00070 1045 SMART PAZ_2_a_3 350 533 IPR003100 GO:0005515
Lsi03g00070 1045 Gene3D - 762 1045 IPR036397 GO:0003676
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00070 Lsi-Chr3:985293 Lsi05g01645 Lsi-Chr5:24088056 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00070 K11593 - csv:116403995 1628.22