Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi03g00103 | CCTAGCCACTGTGGTGGTGGAAGTGGACATGACTCAAGTACGGTGCATATAGTGTACTTAGGGCACAACCGTTTGAGTGATGATACAACTTTGACCTCCAAATACCATCTTCGTCTACTCTCAAAAGTGTTTGCAAGTGAAGAAGATAGTAGAAGAGCCATGTTGTATAGCTACAAGAAAAGTTTTTCGGGAACGATGCAACTCCACACAACAAGAAGTTGGGATTTCTTGGGCCTTCCCATTCCCTCATATACTAGTAATATGAAACCATTATTTCCACTTCGCCTTCCTAGCTATGGTGATCACGACGTCGTTGTTGCCATCTTCGATTCAGGTCGTGTGTGGCCGGAATCCAAAAGTTTCGAGGAGAGTGAAGATATGAAGAGAATTCCATGCAATTGGAAAGGTAAATGCGTTAAAGGATACAGGTTCAACCCAGCCTCAGCCTGCAACCGCAAGCTAATTGGCGCTCGCTACTACCTTAAAGGCTTCGAAGCCCAATATGGAGCCCTCAACACCACCGGCAACCCCGAGTTCCACTCCCCTCGAGATTTCTTAGGTCACGGAACTCACACCGCTTCCACAGTGGTCGGTGCCGTTGTACACAATGTCACCTTCACTGCATCTTCATCACTAGCCAAAGGCACTGCCCGAGGCGGGGCTCCCTGGGCTAGGCTGGCGGTGTACAAGGTGTGTTGGGGAAAGGACTACGAAGGGAAGTGCACCGATGTCGACGTCATGGCTGCTTTCGATGATGCTTTGCATGACGGCGTGGACGTCATCTCCGCCTCGTTTGGAGAGACGCCGCCGTTGGCTCCATTGTTCGAGTCGGCCTCGGCTATTGGCTCATTCCATGCGATGCAGCGGGGAGTGAGTGTGGTGTTTTCTGCTGGGAATGATGGACCCCACCCTTCGCTTGTTCAAAATGTGTCTCCTTGGAGTATTTGTGTTGCTGCTTCTACTATGGATCGAACTTTTCCCACTCCAATACGTCTCCACAACTACTTCTCCATCATGGCTGCACCTGATCATCTTGTAGTCTACTCATGTGTGAAACTAGATTTTTTTATGTTATAA | 1077 | 49.12 | PSHCGGGSGHDSSTVHIVYLGHNRLSDDTTLTSKYHLRLLSKVFASEEDSRRAMLYSYKKSFSGTMQLHTTRSWDFLGLPIPSYTSNMKPLFPLRLPSYGDHDVVVAIFDSGRVWPESKSFEESEDMKRIPCNWKGKCVKGYRFNPASACNRKLIGARYYLKGFEAQYGALNTTGNPEFHSPRDFLGHGTHTASTVVGAVVHNVTFTASSSLAKGTARGGAPWARLAVYKVCWGKDYEGKCTDVDVMAAFDDALHDGVDVISASFGETPPLAPLFESASAIGSFHAMQRGVSVVFSAGNDGPHPSLVQNVSPWSICVAASTMDRTFPTPIRLHNYFSIMAAPDHLVVYSCVKLDFFML | 358 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 1440093 | 1443488 | + | Lsi03G001030.1 | Lsi03g00103 | 657853 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi03g00103 | 358 | Gene3D | Peptidase S8/S53 domain | 103 | 322 | IPR036852 | GO:0004252|GO:0006508 | |
| Lsi03g00103 | 358 | Gene3D | - | 323 | 338 | - | - | |
| Lsi03g00103 | 358 | Pfam | Subtilase family | 103 | 320 | IPR000209 | GO:0006508|GO:0008236 | |
| Lsi03g00103 | 358 | Gene3D | Peptidase S8 propeptide/proteinase inhibitor I9 | 4 | 66 | IPR037045 | - | |
| Lsi03g00103 | 358 | CDD | Peptidases_S8_3 | 67 | 322 | IPR034197 | - | |
| Lsi03g00103 | 358 | ProSiteProfiles | Serine proteases, subtilase domain profile. | 73 | 358 | - | - | |
| Lsi03g00103 | 358 | PANTHER | SUBTILISIN-LIKE PROTEASE SBT3.18 | 65 | 340 | - | - | |
| Lsi03g00103 | 358 | PANTHER | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN | 11 | 64 | IPR045051 | - | |
| Lsi03g00103 | 358 | PANTHER | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN | 65 | 340 | IPR045051 | - | |
| Lsi03g00103 | 358 | SUPERFAMILY | Subtilisin-like | 68 | 336 | IPR036852 | GO:0004252|GO:0006508 | |
| Lsi03g00103 | 358 | PANTHER | SUBTILISIN-LIKE PROTEASE SBT3.18 | 11 | 64 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi03g00103 | Lsi-Chr3:1440093 | Lsi07g00238 | Lsi-Chr7:2631138 | 1.09E-68 | dispersed | |
| Lsi03g00103 | Lsi-Chr3:1440093 | Lsi04g01764 | Lsi-Chr4:24883208 | 2.08E-60 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi03g00103 | - | - | bhj:120083115 | 586.26 |