Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi03g00109 | ATGTCGGGCAGCGAATTACTCTGCTCTCTCCCCACCATAATTTCCCTTCTCTTCTTCTCCTTCACAGCCGCCTTCTCAATTTTCTCTTTCTCTCTTTACATCCTCCGCCTTAACCCATGCTGTAACTGTTGCCTTTGCCGGACCTATCTTTCTTCGTCCTGGTCTTCCTCTTTCCCCAATTTATCCGATTGGTACACTAACCTTCTCTCCCATTCCCCCACCGCCACCATCCACATCCACGTCCTCTCCAACATCCTAACCGCCAACCCCGACAACGTCCAACACATCCTCAAATCCAACTTCCATAACTACCCTAAAGGAAAACCATTCTCTTCCATCCTTGGCGACCTTCTCGGTCACGGCATTTTCAATGTCGATGGCCATTCATGGCGGTTCCAAAGAAAGATGGCAAGCTTGGAACTCGGTAGTCTCTCGCTCCGGTCCCACGCTTTCGAGATTTTAACTACTCAGATTCAAAGTAGGTTGGTTCCTTTGATGAAGGAAGTTGGTGAAGTGGATTTGCAAGATGTGTTTAGGAGGTTTTCATTTGATAATATTTGTAGATTTTCGTTTGGATTGGATCCTGGGTGTTTGAGGTTGTGTTTGCCCATATCGGAGTTTGCGGTGGCGTTTGATTTGGCGTCGAGGTTGTCGGCGGAAAGAGCGATGGCGGCGTCGCCGATTATGTGGAGGATTAAAAGGGTTTTGAGAGTGGGATCGGAGAGGAAGCTGAGGGAAGCTATTAAAATGGTGGATGGATTAGCGATGGAAGTTATAAGGCAACGGAGGGAGATGGGGTTTTCTCATAAGAATGATCTTCTCTCTAGATTTATGGCTTCTACTAATGATGATCGATATCTTAGAGACATTGTCGTCAGCTTCCTCCTCGCCGGTCGGGACACGGTGGCGTCGGCGTTGACTAGCTTGTTCTGGCTACTTTCCCAAAACCCGGAAGTGGAGACTAAAATTATCTCCGAGTCAGACCGGATCATTGGACCGGACCGGGATACGGTCCCCAGTTTCGACAATCTTAAAGACATGCACTACCTCCAAGCAGCGGTCTACGAGAACATGCGCCTCTTTCCTCCGGTTCAGTTCGACTCCAAGTTTGCCGAGGAAGACGACATCTTGCCGGACGGTACATTCGTCCAGAAGGGCACAAGGGTAACTTACCACCCTTACGCCATGGGCCGAATGGACCGGATTTGGGGACCCGATTGTCTCGAGTTCAAACCGGAGAGGTGGCTCAAGAATGGTTACTTTGCGCCCGAAAACCCATTTAAGTTTCCAGTTTTTCAAGCCGGTTTAAGGGTTTGTTTAGGGAAGGAGCTAGCAGTGATGGACGTGAAATGCGTCGCAGTTGTATTGATTCGAAAGTTTAAGATCCGGTTGGCGGGAACCGATCGGGTTGTTCGGTTTGCTCCCGGTCTAACAGCTAGCTGGAGAGGTGGGTTACCGGTTCGAATTGAAGAAAGAAGCCGTTGTTAA | 1488 | 49.13 | MSGSELLCSLPTIISLLFFSFTAAFSIFSFSLYILRLNPCCNCCLCRTYLSSSWSSSFPNLSDWYTNLLSHSPTATIHIHVLSNILTANPDNVQHILKSNFHNYPKGKPFSSILGDLLGHGIFNVDGHSWRFQRKMASLELGSLSLRSHAFEILTTQIQSRLVPLMKEVGEVDLQDVFRRFSFDNICRFSFGLDPGCLRLCLPISEFAVAFDLASRLSAERAMAASPIMWRIKRVLRVGSERKLREAIKMVDGLAMEVIRQRREMGFSHKNDLLSRFMASTNDDRYLRDIVVSFLLAGRDTVASALTSLFWLLSQNPEVETKIISESDRIIGPDRDTVPSFDNLKDMHYLQAAVYENMRLFPPVQFDSKFAEEDDILPDGTFVQKGTRVTYHPYAMGRMDRIWGPDCLEFKPERWLKNGYFAPENPFKFPVFQAGLRVCLGKELAVMDVKCVAVVLIRKFKIRLAGTDRVVRFAPGLTASWRGGLPVRIEERSRC | 495 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 1522966 | 1525589 | - | Lsi03G001090.1 | Lsi03g00109 | 657859 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi03g00109 | 495 | Gene3D | Cytochrome P450 | 53 | 495 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi03g00109 | 495 | PANTHER | CYTOCHROME P450 | 16 | 491 | - | - | |
Lsi03g00109 | 495 | SUPERFAMILY | Cytochrome P450 | 60 | 492 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi03g00109 | 495 | Pfam | Cytochrome P450 | 73 | 467 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi03g00109 | 495 | PRINTS | E-class P450 group I signature | 429 | 439 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi03g00109 | 495 | PRINTS | E-class P450 group I signature | 286 | 303 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi03g00109 | 495 | PRINTS | E-class P450 group I signature | 439 | 462 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi03g00109 | 495 | PRINTS | E-class P450 group I signature | 306 | 332 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi03g00109 | 495 | PRINTS | P450 superfamily signature | 297 | 314 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi03g00109 | 495 | PRINTS | P450 superfamily signature | 439 | 450 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi03g00109 | 495 | PRINTS | P450 superfamily signature | 352 | 363 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi03g00109 | 495 | PRINTS | P450 superfamily signature | 430 | 439 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi03g00109 | 495 | PANTHER | CYTOCHROME P450 94C1 | 16 | 491 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi03g00109 | Lsi-Chr3:1522966 | Lsi03g01909 | Lsi-Chr3:30459274 | 0 | dispersed | |
Lsi03g00109 | Lsi-Chr3:1522966 | Lsi06g01637 | Lsi-Chr6:26666402 | 1.19E-138 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi03g00109 | K20624 | - | csv:101207724 | 892.878 |