Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00109 ATGTCGGGCAGCGAATTACTCTGCTCTCTCCCCACCATAATTTCCCTTCTCTTCTTCTCCTTCACAGCCGCCTTCTCAATTTTCTCTTTCTCTCTTTACATCCTCCGCCTTAACCCATGCTGTAACTGTTGCCTTTGCCGGACCTATCTTTCTTCGTCCTGGTCTTCCTCTTTCCCCAATTTATCCGATTGGTACACTAACCTTCTCTCCCATTCCCCCACCGCCACCATCCACATCCACGTCCTCTCCAACATCCTAACCGCCAACCCCGACAACGTCCAACACATCCTCAAATCCAACTTCCATAACTACCCTAAAGGAAAACCATTCTCTTCCATCCTTGGCGACCTTCTCGGTCACGGCATTTTCAATGTCGATGGCCATTCATGGCGGTTCCAAAGAAAGATGGCAAGCTTGGAACTCGGTAGTCTCTCGCTCCGGTCCCACGCTTTCGAGATTTTAACTACTCAGATTCAAAGTAGGTTGGTTCCTTTGATGAAGGAAGTTGGTGAAGTGGATTTGCAAGATGTGTTTAGGAGGTTTTCATTTGATAATATTTGTAGATTTTCGTTTGGATTGGATCCTGGGTGTTTGAGGTTGTGTTTGCCCATATCGGAGTTTGCGGTGGCGTTTGATTTGGCGTCGAGGTTGTCGGCGGAAAGAGCGATGGCGGCGTCGCCGATTATGTGGAGGATTAAAAGGGTTTTGAGAGTGGGATCGGAGAGGAAGCTGAGGGAAGCTATTAAAATGGTGGATGGATTAGCGATGGAAGTTATAAGGCAACGGAGGGAGATGGGGTTTTCTCATAAGAATGATCTTCTCTCTAGATTTATGGCTTCTACTAATGATGATCGATATCTTAGAGACATTGTCGTCAGCTTCCTCCTCGCCGGTCGGGACACGGTGGCGTCGGCGTTGACTAGCTTGTTCTGGCTACTTTCCCAAAACCCGGAAGTGGAGACTAAAATTATCTCCGAGTCAGACCGGATCATTGGACCGGACCGGGATACGGTCCCCAGTTTCGACAATCTTAAAGACATGCACTACCTCCAAGCAGCGGTCTACGAGAACATGCGCCTCTTTCCTCCGGTTCAGTTCGACTCCAAGTTTGCCGAGGAAGACGACATCTTGCCGGACGGTACATTCGTCCAGAAGGGCACAAGGGTAACTTACCACCCTTACGCCATGGGCCGAATGGACCGGATTTGGGGACCCGATTGTCTCGAGTTCAAACCGGAGAGGTGGCTCAAGAATGGTTACTTTGCGCCCGAAAACCCATTTAAGTTTCCAGTTTTTCAAGCCGGTTTAAGGGTTTGTTTAGGGAAGGAGCTAGCAGTGATGGACGTGAAATGCGTCGCAGTTGTATTGATTCGAAAGTTTAAGATCCGGTTGGCGGGAACCGATCGGGTTGTTCGGTTTGCTCCCGGTCTAACAGCTAGCTGGAGAGGTGGGTTACCGGTTCGAATTGAAGAAAGAAGCCGTTGTTAA 1488 49.13 MSGSELLCSLPTIISLLFFSFTAAFSIFSFSLYILRLNPCCNCCLCRTYLSSSWSSSFPNLSDWYTNLLSHSPTATIHIHVLSNILTANPDNVQHILKSNFHNYPKGKPFSSILGDLLGHGIFNVDGHSWRFQRKMASLELGSLSLRSHAFEILTTQIQSRLVPLMKEVGEVDLQDVFRRFSFDNICRFSFGLDPGCLRLCLPISEFAVAFDLASRLSAERAMAASPIMWRIKRVLRVGSERKLREAIKMVDGLAMEVIRQRREMGFSHKNDLLSRFMASTNDDRYLRDIVVSFLLAGRDTVASALTSLFWLLSQNPEVETKIISESDRIIGPDRDTVPSFDNLKDMHYLQAAVYENMRLFPPVQFDSKFAEEDDILPDGTFVQKGTRVTYHPYAMGRMDRIWGPDCLEFKPERWLKNGYFAPENPFKFPVFQAGLRVCLGKELAVMDVKCVAVVLIRKFKIRLAGTDRVVRFAPGLTASWRGGLPVRIEERSRC 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1522966 1525589 - Lsi03G001090.1 Lsi03g00109 657859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00109 495 Gene3D Cytochrome P450 53 495 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g00109 495 PANTHER CYTOCHROME P450 16 491 - -
Lsi03g00109 495 SUPERFAMILY Cytochrome P450 60 492 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g00109 495 Pfam Cytochrome P450 73 467 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g00109 495 PRINTS E-class P450 group I signature 429 439 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g00109 495 PRINTS E-class P450 group I signature 286 303 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g00109 495 PRINTS E-class P450 group I signature 439 462 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g00109 495 PRINTS E-class P450 group I signature 306 332 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g00109 495 PRINTS P450 superfamily signature 297 314 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g00109 495 PRINTS P450 superfamily signature 439 450 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g00109 495 PRINTS P450 superfamily signature 352 363 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g00109 495 PRINTS P450 superfamily signature 430 439 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g00109 495 PANTHER CYTOCHROME P450 94C1 16 491 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00109 Lsi-Chr3:1522966 Lsi03g01909 Lsi-Chr3:30459274 0 dispersed
Lsi03g00109 Lsi-Chr3:1522966 Lsi06g01637 Lsi-Chr6:26666402 1.19E-138 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00109 K20624 - csv:101207724 892.878