Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00110 ATGGGTTTGAGAAATCACATGGCAGAAGATAACATCTTTTGTCTTCATGAATCTCCAACTTTCATAGAATGGCTTAAACCACACAACGCTTCTTCTTCTTCTTCTCCCTCCATCTCTCTCTCGTCTTCGTCTTCGTCTTCCTCCGAACGAGATTTGATCTCTCAGACAAGCGTCCAACATGAATTTTTCATTTCGTCCCGATGCCTGCCTTTGTTCGCCGAGACGGAGGCCTCGGCGAAGAAGGACGAAGAAGGGGCTCAAGCTCGAGATCATGAAGGGAAATGTTTGGGAATTAAAGAGGAAGATGAAGATATGGAGAAAGTTGAAGTGGGTTTGCACATTGGGCTTCCAAATGTTGGTGATGGGAAGAATTTGAATGTTTGTGTAAAGAAAGAAGAAATAGGCAGTTTGAAGAAAAGCTTCTCTAATTTTAAGAGTCAAGGAAGGTTTTGGATCCCAACACAGGCTCAGATCCTTGTTGGTCCGATGCAATTTGCTTGCTCCATCTGCAACAAGTCATTTAATAGATACAATAACATGCAGATGCACATGTGGGGGCATGGATCTGAGTACAGAAAAGGGCCAGAATCTCTACGAGGAACACAGCCAGCAGCAATGCTAAGACTGCCATGTTATTGCTGTGCTCAAGGCTGCAAGAACAATATTAACCATCCAAGAGCCAAGCCATTAAAAGACTTCAGAACCCTTCAAACCCATTACAAAAGAAAGCATGGTTCTAAGCCATTTATGTGTAGAAAATGTGGCAAAACTTTAGCTGTTAAAGGAGATTGGAGAACCCATGAAAAAAATTGTGGTAAGCTTTGGTATTGCAGCTGTGGCTCAGATTTCAAACACAAAAGATCTCTTAAAGATCACATCAGATCTTTTGGTAAAGGCCACTCCCCTTGCTCCTCTCTTGATGATGAATGCCTCACTGGATCTGATCAAGAAGATCACTTCATTTAA 966 42.24 MGLRNHMAEDNIFCLHESPTFIEWLKPHNASSSSSPSISLSSSSSSSSERDLISQTSVQHEFFISSRCLPLFAETEASAKKDEEGAQARDHEGKCLGIKEEDEDMEKVEVGLHIGLPNVGDGKNLNVCVKKEEIGSLKKSFSNFKSQGRFWIPTQAQILVGPMQFACSICNKSFNRYNNMQMHMWGHGSEYRKGPESLRGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGSKPFMCRKCGKTLAVKGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIRSFGKGHSPCSSLDDECLTGSDQEDHFI 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1578744 1582282 - Lsi03G001100.1 Lsi03g00110 657860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00110 321 SUPERFAMILY beta-beta-alpha zinc fingers 234 269 IPR036236 -
Lsi03g00110 321 ProSitePatterns Zinc finger C2H2 type domain signature. 167 187 IPR013087 -
Lsi03g00110 321 Gene3D Classic Zinc Finger 207 298 - -
Lsi03g00110 321 SMART c2h2final6 249 269 IPR013087 -
Lsi03g00110 321 SMART c2h2final6 212 244 IPR013087 -
Lsi03g00110 321 SMART c2h2final6 165 187 IPR013087 -
Lsi03g00110 321 SUPERFAMILY beta-beta-alpha zinc fingers 156 188 IPR036236 -
Lsi03g00110 321 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 1 317 - -
Lsi03g00110 321 Gene3D Classic Zinc Finger 164 187 - -
Lsi03g00110 321 PANTHER ZINC FINGER PROTEIN WIP2 1 317 IPR043584 GO:0003700|GO:0010468
Lsi03g00110 321 ProSiteProfiles Zinc finger C2H2 type domain profile. 165 192 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00110 Lsi-Chr3:1578744 Lsi03g01705 Lsi-Chr3:28423079 8.72E-100 dispersed
Lsi03g00110 Lsi-Chr3:1578744 Lsi02g02581 Lsi-Chr2:32280466 3.93E-98 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24950 PF13912 zf-C2H2_6 6.40E-05 CL0361 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00110 - - bhj:120082596 578.941