Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00118 ATGGCCAATCTCTCAAATTTCCATGGAATAATCCACCATAATCCTTCTCTTCCTTTTATAAATCCAGAAGGTTCAGCTTTTGATTTTGGAGAGCTGGAAGAAGCCATAGTTTTGCAGGGAGTTAAGCTTGGAAATGATGAACCCAAATCTCCACATTTTCTCACAGGAAGGCCTGCTGCTACTCTTGAAATGTTCCCTTCTTGGCCAATAAGGTTTCAACAAACTCCAACATTGGGTGGAGGTTCAAAGTCAGAGAGTACAGATTCAGAATCAGCAAATATAAACAATAATACTCTCACAAGCAAAACAGAATTAGAAATGGAACCTGAATCACCAATAAGTAGAAGAGCTTGTTCTTCAAATCAAGGATTGTTTGATCAAAATCATCATCATCATCATCATCATCTTCTTCAACTTCAACATCTTCAATCAGAGTTTGAAGATGATTCCTTGAGAACAGAATCATTATCACACCAAAATCAATCTCCTCCCAAAGAAAAGGCTTATATTCAACAGCTAGAGTCTAGTAGAATCAAGCTTTCTCAGCTTGAACAAGACCTCCATAGAGCACGTTCTCAGGGATTGTTTCTAGGTGCTTGTGGTGGCGTAATGGGTGGCAATATCAGCTCAGGAGCTGCAATATTTGACATGGAGTATGCGCGGTGGCTAGACGAGGACCACCGTTTGATGGCGGAGCTGCAGGCGGCGTTGCAAGGGCATCTCCCGGACGGCGATCTCCGAGCAATAGTAGACAGTTACATCTCTCACTATGACGAAATATTTCACCTGAAAGGCGTGGCAGCGAAATCGGACGTGTTTCATTTGATCACGGGAATGTGGATGACTCCAGCGGAGCGTTGCTTCCTGTGGATCGGCGGATTTCGGCCATCAAAGCTCATAGAGGCTGATATGTTGAGACAACAAACACTTCATCAATTACATCGAATATTGACGATTCGACAGGCAGCTCGATGTTTCGTGGTAATGGGAGAGTACTATGGAAGACTTCGAACTCTTAGTTCCTTGTGGGTCTCTCGACCAAGAGAGTACGTAAGATTTAACGACAAATAA 1071 43.04 MANLSNFHGIIHHNPSLPFINPEGSAFDFGELEEAIVLQGVKLGNDEPKSPHFLTGRPAATLEMFPSWPIRFQQTPTLGGGSKSESTDSESANINNNTLTSKTELEMEPESPISRRACSSNQGLFDQNHHHHHHHLLQLQHLQSEFEDDSLRTESLSHQNQSPPKEKAYIQQLESSRIKLSQLEQDLHRARSQGLFLGACGGVMGGNISSGAAIFDMEYARWLDEDHRLMAELQAALQGHLPDGDLRAIVDSYISHYDEIFHLKGVAAKSDVFHLITGMWMTPAERCFLWIGGFRPSKLIEADMLRQQTLHQLHRILTIRQAARCFVVMGEYYGRLRTLSSLWVSRPREYVRFNDK 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1664079 1668446 - Lsi03G001180.1 Lsi03g00118 657868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00118 356 MobiDBLite consensus disorder prediction 73 118 - -
Lsi03g00118 356 MobiDBLite consensus disorder prediction 73 107 - -
Lsi03g00118 356 ProSiteProfiles DOG1 domain profile. 212 356 IPR025422 GO:0006351|GO:0043565
Lsi03g00118 356 PANTHER TRANSCRIPTION FACTOR TGA9 301 352 - -
Lsi03g00118 356 PANTHER TRANSCRIPTION FACTOR TGA9 39 301 - -
Lsi03g00118 356 Coils Coil 166 193 - -
Lsi03g00118 356 Pfam Seed dormancy control 230 301 IPR025422 GO:0006351|GO:0043565
Lsi03g00118 356 PANTHER TRANSCRIPTION FACTOR TGA2-LIKE ISOFORM X1 39 301 - -
Lsi03g00118 356 PANTHER TRANSCRIPTION FACTOR TGA2-LIKE ISOFORM X1 301 352 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00118 Lsi-Chr3:1664079 Lsi04g00016 Lsi-Chr4:217909 3.51E-13 dispersed
Lsi03g01716 Lsi-Chr3:28531305 Lsi03g00118 Lsi-Chr3:1664079 8.06E-13 transposed
Lsi07g00186 Lsi-Chr7:2038467 Lsi03g00118 Lsi-Chr3:1664079 4.74E-33 transposed
Lsi10g01166 Lsi-Chr10:15933908 Lsi03g00118 Lsi-Chr3:1664079 8.16E-47 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00118 K14431 - csv:101204604 535.413