Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00127 ATGAAATCGTGCAGGCCATTTCAGCCAATCATGTTCACGCTTTATCAGCTTCTTTCCATTATTTATAAGAACAGTCTGATACAGCTCCATGGATTAGTAGTACTCATTGCATTGCAATGTCAACCAAAATTACTTTACACCTCCATCAATAGCGAGAAGGAAGCTCCACCGAACTTGAGCGTGCGAGGGTATGATCTCATTGATGCGGTGAAGTTTCGGGTCGAGAAGGCATGCCCTGGAGTTGTCTCTTGTGCTGATATCATTGTCATGGCCACTAGAGATGCCGTCAATTGGGCTGGGGGAGGACGATACAACATTGAAACCGGACGGCGAGATGCCTTCCGACCAGCTGATATTGTCGATCTTCCCGGGCCTTCAATATCGGTCTCAGATTCCATTGCAGCCTTCTCCAAAAGAAACCTTAACGTTACAGATATGGTTTATCTTCTTGGTGGCCACACTGTTGGTGTATCACAATGCATTTTCTTCAAGGATCGTCTGTATAATTACAAGAACACAGGGGGACCCGACCCGACCATCGATCCGTGGTTTCTGGACGACCTCCAAACCCAATGTCCTCAAGATTCCGGCGACGATAATACCGTATTTCTTGACCAAAACCGTATGAGTTCTTTCGTCGTTGACAAGTCCTTCCATAGGCAAATATTTCAACAAAGAGGAATATTGGAAATTGATCAACAACTTGCTTTGGATCCATTGACAAAGGATTTCGTGTCGAATGTGGCGTTCCGATCCGACTTTGCCTTCAAGTTTGGACAAGCAATGATCAAGATGGGAAGAATTCAAGTTCTTACTGGCTCAGAAGGAGAAATTAGAAGAACATGCATCTTTTCAACGGCGGAATCCGGCGACCCAGATCCGATCGTGGACTACTTGACATCCCCACTAGGCGCCATAATCAACGGCAGTTTCTTCACCTTCACAGGCCTTCGCTCAGCCTTCACCGACTTCCCTCCAAATTTCAAACCCACAAAAGCCACCTTCGCCGAGTTCCCAGCCCTTCTCAGCCAGAGCGTCTCTATGGCCATCCTCCAGTACCCTGCCGGCACCCTCAACCCGCCCCACACCCACCCTCGTTCAGCCGAGCTCCTCCTCGTTGTCAGCGGCAGCCTCCAGGTCGGCTTCGTCGATACCACCAACCAGCTCTTCAACCAGACCCTTCAGCTTGGGGACATGTTCCTGTTCCCCAAAGGCTTGGTCCATTTCCAGTTCAATGCCGACCCTCGAAACTCTGCCACCGCCATTGCTGCCTTCGCCAGCGCTAACCCCGGCACCGTGTCGTTACCGCCAACCGTGTTTGCCAGTGGGATTAGTGATGAGATTCTTGCTGAGGCCTTCAAGACTGATGTTGTTGTTATTCAAAGCATAAAGGCTGGCCTTGCACCACCAAAGAGTTAG 1419 49.54 MKSCRPFQPIMFTLYQLLSIIYKNSLIQLHGLVVLIALQCQPKLLYTSINSEKEAPPNLSVRGYDLIDAVKFRVEKACPGVVSCADIIVMATRDAVNWAGGGRYNIETGRRDAFRPADIVDLPGPSISVSDSIAAFSKRNLNVTDMVYLLGGHTVGVSQCIFFKDRLYNYKNTGGPDPTIDPWFLDDLQTQCPQDSGDDNTVFLDQNRMSSFVVDKSFHRQIFQQRGILEIDQQLALDPLTKDFVSNVAFRSDFAFKFGQAMIKMGRIQVLTGSEGEIRRTCIFSTAESGDPDPIVDYLTSPLGAIINGSFFTFTGLRSAFTDFPPNFKPTKATFAEFPALLSQSVSMAILQYPAGTLNPPHTHPRSAELLLVVSGSLQVGFVDTTNQLFNQTLQLGDMFLFPKGLVHFQFNADPRNSATAIAAFASANPGTVSLPPTVFASGISDEILAEAFKTDVVVIQSIKAGLAPPKS 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1773109 1780641 + Lsi03G001270.1 Lsi03g00127 657877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00127 472 CDD cupin_OxOx 291 467 - -
Lsi03g00127 472 ProSitePatterns Peroxidases proximal heme-ligand signature. 145 155 IPR019793 -
Lsi03g00127 472 Gene3D Jelly Rolls 290 468 IPR014710 -
Lsi03g00127 472 ProSiteProfiles Plant heme peroxidase family profile. 40 286 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g00127 472 PRINTS Haem peroxidase superfamily signature 145 160 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g00127 472 PRINTS Haem peroxidase superfamily signature 100 112 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g00127 472 PRINTS Haem peroxidase superfamily signature 82 99 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g00127 472 SUPERFAMILY Heme-dependent peroxidases 48 283 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lsi03g00127 472 SMART Cupin_1_3 315 461 IPR006045 -
Lsi03g00127 472 CDD secretory_peroxidase 47 282 IPR033905 GO:0004601|GO:0042744
Lsi03g00127 472 PRINTS Plant peroxidase signature 221 238 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00127 472 PRINTS Plant peroxidase signature 81 91 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00127 472 PRINTS Plant peroxidase signature 260 273 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00127 472 PRINTS Plant peroxidase signature 62 75 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00127 472 PRINTS Plant peroxidase signature 100 115 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00127 472 PRINTS Plant peroxidase signature 144 156 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00127 472 SUPERFAMILY RmlC-like cupins 324 465 IPR011051 -
Lsi03g00127 472 Pfam Peroxidase 49 249 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g00127 472 Pfam Cupin 332 456 IPR006045 -
Lsi03g00127 472 PANTHER PEROXIDASE 60 40 287 - -
Lsi03g00127 472 Gene3D Peroxidase, domain 2 123 266 - -
Lsi03g00127 472 Gene3D - 48 282 - -
Lsi03g00127 472 PANTHER PEROXIDASE 25-RELATED 40 287 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00127 Lsi-Chr3:1773109 Lsi09g01839 Lsi-Chr9:27215644 1.46E-59 dispersed
Lsi03g00127 Lsi-Chr3:1773109 Lsi11g01469 Lsi-Chr11:23252468 3.23E-49 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00127 K00430 - csv:101210173 406.757