Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi03g00136 | ATGGGTGATGTCGAAGGTTCCCCAGGAAGCTCAATGCATGGAGTAACTGGAAGAGAGCAAACCTATGCATTCTCCGTAGCTTCTCCAATTGTCCCAACTGACACAACCGCTAAATTTGCATTACCCGTTGACTCTGAGCATAAAGCTAAGGTTTTCAAGATATGGTCTTTAGCCAATCCCCACATGAGAACCTTCCACCTTTCTTGGATTTCCTTCTTTACGTGTTTCGTCTCGACGTTTGCAGCCGCCCCTCTCGTCCCCATCATTCGAGACAATCTCAACCTCACCAAAGTTGACATTGGTAACGCTGGAGTCACCTCCGTCTCCGGTAGTATCTTCTCTCGTCTTGTTATGGGCGCCGTCTGTGACCTTTTGGGGCCACGTTATGGTTGTGCTTTCCTCATTATGTTGTCGGCTCCGACCGTGTTTTGTATGTCGTTTGTGTCGAATGCTGCTGGCTACATAGCGGTTAGATTCATGATTGGGTTCTCGCTCGCGACGTTCGTGTCGTGTCAGTATTGGATGAGCACAATGTTCAACAGTCAGATAATTGGGCTTGTGAATGGGACTGCTGCTGGGTGGGGGAATATGGGAGGAGGAGCTACTCAACTCATTATGCCATTGTTGTTTGATGTGATTCAGAAAGCTGGGGCTACTCCTTTCACTGCTTGGAGGATTGCCTTTTTTATCCCTGGTTCCCTTCATATTCTCATGGGCATTTTGGTCTTAACTCTTGGCCAAGACTTGCCTGATGGTAACCTTAGCAGTCTTCAAAAGAAGGGAAATGTTGCCAAAGATAAATTCTCCAAAGTGTTGTGGTATGCTGTCACCAATTATCGAACTTGGATCTTCGTCCTCCTCTACGGCTACTCCATGGGGGTCGAACTTTCCACCGATAACGTCATTGCCGAATATTTCTACGATAGGTAA | 930 | 47.1 | MGDVEGSPGSSMHGVTGREQTYAFSVASPIVPTDTTAKFALPVDSEHKAKVFKIWSLANPHMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKVDIGNAGVTSVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFCMSFVSNAAGYIAVRFMIGFSLATFVSCQYWMSTMFNSQIIGLVNGTAAGWGNMGGGATQLIMPLLFDVIQKAGATPFTAWRIAFFIPGSLHILMGILVLTLGQDLPDGNLSSLQKKGNVAKDKFSKVLWYAVTNYRTWIFVLLYGYSMGVELSTDNVIAEYFYDR | 309 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 1910105 | 1911172 | - | Lsi03G001360.1 | Lsi03g00136 | 657886 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi03g00136 | 309 | CDD | MFS_NRT2_like | 65 | 309 | IPR044772 | GO:0015112 | |
| Lsi03g00136 | 309 | PANTHER | HIGH-AFFINITY NITRATE TRANSPORTER 2.3 | 1 | 309 | IPR044772 | GO:0015112 | |
| Lsi03g00136 | 309 | ProSiteProfiles | Major facilitator superfamily (MFS) profile. | 64 | 309 | IPR020846 | GO:0022857 | |
| Lsi03g00136 | 309 | PANTHER | HIGH-AFFINITY NITRATE TRANSPORTER 2.1-LIKE | 1 | 309 | - | - | |
| Lsi03g00136 | 309 | Gene3D | MFS general substrate transporter like domains | 58 | 254 | IPR036259 | - | |
| Lsi03g00136 | 309 | SUPERFAMILY | MFS general substrate transporter | 58 | 308 | IPR036259 | - | |
| Lsi03g00136 | 309 | Pfam | Major Facilitator Superfamily | 69 | 293 | IPR011701 | GO:0022857|GO:0055085 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi03g00136 | Lsi-Chr3:1910105 | Lsi04g00568 | Lsi-Chr4:5193072 | 2.04E-119 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi03g00136 | K02575 | - | csv:101218006 | 611.298 |