Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00141 ATGGGTACAACGACCGGAGCCGACGGCGCCCACGGCTGCGCAGCAATCCGATTCCCCTTGCAGGTGATTAAAGGGCGGTGGTTTACCGTTTTCGCTACATTTCTGATCATGGCCGGCGCCGGTGCCACGTATCTGTTCGGTGTCTACTCCAAACAGATCAAAAGGACGCTTGGATATGACCAAACCACTTTGAATCTGATGGGTTTTTCTAAAGATCTGGGTGCTAACGTCGGTGTGCTGTCCGGTTTAGTGGCGGAGGTGATGCCGACTTGGTTCGTTCTCCTCCTTGGCTCCGCCTTGAACTTCACTGGATACTTCATGATTTGGCTTGCGGTTACCGGCAGAATCGCAAAGCCTCAAGTCTGGCAGATGTGTCTTTACATTTGCGTTGGAGCGAATTCCCAGAATTTCGCTAATACTGGCGCTTTGGTTACTTGTATCCTGAATTTCCCCGAGAGCCGTGGGGCTATGATGGGGCTTTTGAAGGGATTCACAGGGCTGAGCGGCGCCATTCTCACACAGATTTATTTGGCCGTCTATGGCGATGATGCCACGTCGTTGATCCTTTTAATTGGGTGGCTCCCGGCGGCGCTTTCCGTCCTTTTTGTTTTCACGATTCGGAGGCTCAGAGTAGAGAGACAACCGAACGAGAAGAGGGTTTTTTACCATTTCCTTTATGTCTCAATTGGGTTAGCGCTTTTCATCATGATTATGAATATTGTTCAGAAGAGAGTGGAATTCAACCATACGGCTTATGCTATAAGTGCTACTGTGATTTGCGTATTTCTTTTCCTTCCTCTGTTTATTGTGATCCGAGAAGAGCTTCATCTCTGGAATGCAAAGAAAACTCCCCCAATGCCTAACGAAAACCCACAATCGCAATCTCAACCAAAATCAATTGATGAACCCAAAATCATCACAGAAGCATCAAAAGAAATCAAGGAAATCGCAAACCCACCACCAGCGTCCTGTTTTTCCAACATTCATCACAAGCCAGCCAGAGGAGACGATTACACAATCCTCCAAGCACTTCTCAGCATCGATATGTTGGTTCTGTTCATCGCAACATTCTGTGGGCTAGGCACAAGCTTAACCGCAGTAGATAATTTGGGGCAAATCGGTGAATCACTCGGCTACCCATTAAAAACAGTAAGCTCATTCGTTTCATTAGTAAGCATTTGGAATTACTTCGGCAGAGTATTCTCTGGATTCGTCTCTGAAACCCTTCTGGCAAAATTCAAATTCCCAAGACCTTTAATGATGACATTAGTCCTTCTTCTCTCTTGCATTGGCCAACTCTTAATCGCTTTCCCAGTGCCAGGCTCCGTCTACATAGCCTCCATCATCATCGGATTCTCGTTCGGCGCACAGCTTCCCCTGCTTTTCGCCATAATTTCAGAGCTATTCGGACTGAAATATTTCTCCACTCTGTTCAATTTTGGGCAAATTGCAAGCCCGTTAGGATCGTATATTCTGAATGTGAAAGTGGCTGGAATAATGTATGACATGGAAGCTTTAAAGCAGCTGAAGGAGAAGGGGTTAGACAGATCGGCGGTGAAGGAATTGACTTGCATTGGAAAGCAATGTTACAGGAAATCGTTTACATTAATGGCGATTGTTACTTTTGTTGGAGCTATGGTTTCGCTGGTTTTAGTGATGAGAACAAGGGAGTTTTACAAAGGGGATATTTACAAGAAGTTCAGAGACGACGAAGTGAAGGAGGAGACCGTTACTGCTCGGGAATCCAAGTGA 1752 46.12 MGTTTGADGAHGCAAIRFPLQVIKGRWFTVFATFLIMAGAGATYLFGVYSKQIKRTLGYDQTTLNLMGFSKDLGANVGVLSGLVAEVMPTWFVLLLGSALNFTGYFMIWLAVTGRIAKPQVWQMCLYICVGANSQNFANTGALVTCILNFPESRGAMMGLLKGFTGLSGAILTQIYLAVYGDDATSLILLIGWLPAALSVLFVFTIRRLRVERQPNEKRVFYHFLYVSIGLALFIMIMNIVQKRVEFNHTAYAISATVICVFLFLPLFIVIREELHLWNAKKTPPMPNENPQSQSQPKSIDEPKIITEASKEIKEIANPPPASCFSNIHHKPARGDDYTILQALLSIDMLVLFIATFCGLGTSLTAVDNLGQIGESLGYPLKTVSSFVSLVSIWNYFGRVFSGFVSETLLAKFKFPRPLMMTLVLLLSCIGQLLIAFPVPGSVYIASIIIGFSFGAQLPLLFAIISELFGLKYFSTLFNFGQIASPLGSYILNVKVAGIMYDMEALKQLKEKGLDRSAVKELTCIGKQCYRKSFTLMAIVTFVGAMVSLVLVMRTREFYKGDIYKKFRDDEVKEETVTARESK 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2026021 2027772 + Lsi03G001410.1 Lsi03g00141 657891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00141 583 MobiDBLite consensus disorder prediction 282 301 - -
Lsi03g00141 583 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 11 575 - -
Lsi03g00141 583 Gene3D MFS general substrate transporter like domains 344 560 IPR036259 -
Lsi03g00141 583 Pfam Nodulin-like 26 271 IPR010658 -
Lsi03g00141 583 SUPERFAMILY MFS general substrate transporter 26 557 IPR036259 -
Lsi03g00141 583 MobiDBLite consensus disorder prediction 285 301 - -
Lsi03g00141 583 CDD MFS_Mch1p_like 25 545 - -
Lsi03g00141 583 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4 11 575 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01455 Lsi-Chr2:20235090 Lsi03g00141 Lsi-Chr3:2026021 0 dispersed
Lsi03g00141 Lsi-Chr3:2026021 Lsi04g00096 Lsi-Chr4:1102253 0 dispersed
Lsi10g00482 Lsi-Chr10:6946048 Lsi03g00141 Lsi-Chr3:2026021 1.41E-102 dispersed
Lsi03g00141 Lsi-Chr3:2026021 Lsi03g00142 Lsi-Chr3:2033773 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00141 - - csv:101217765 994.571