Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00142 ATGAATTGCCAGTTTGTGAAACAAGTTGTTCAAGGAAGATGGTTTTCCGTATTCGCCTCGTTTCTCGTCATGATTGGCTGCGGTTCGCCTTACTTGTTTGGAACATACTCCAAAGTTTTAAAGACCAAATTTGATTACAATCAAACCCAACTTAGCACCTTAGGTTTCGGTAAAGATCTCGGTTCAAACCTTGGTATTTTTGCCGGACTTTTCGCCGAGGTGGCTCCACCGTGGTTGCTCTTCCTTGTAGGTTTAACCTTAAACTTCTTCAGCTACTTCATGATATGGCTCTCTGTTACTGAGTACATCCCAAAGCCCAAATTATGGCTAGTGTTTATTTACATTTTCATTTCCTCTAATGCACAAAACTTCCCTAACACTGTTGTTATGGTGACAAACGTTAGAAATTTCCCTGATCAAAGAGGCATTATTTTGGGCCTTCTCAAGGGCTTTGTGGGCCTTGGTGGGGCCATTTTAACTCAAATTTATTTTAGCATTTATGGCAACTTAGATCCTATCCATCTTGTCCTCCTTCTTTCATGGCTACCTTCCATTGTTTATTTCTTGGTTTTTCCTTCAATTAGAACTATCAAAGCTCCCAAGTATCCACATGAGCTTAAAGTTTTCTACTACTTTCTTTACATAGCCATAACAATAGCCATCTTCATCTTGTTTCTTAGCATAACACAACGAAACATCGTCTTCTCTCATGCTAATTATATCAGTGGTGTGTCCGTCATTGTTCTCTTACTCTGTCTCCCTCTTTTGATAGCTATTAAAGAAGAATTTTTTCTCTTCAAACTCAACCAACAAACCAAGGATCCTTCGGTTGTGGTTTCAATTCCTGTTCAGAAACTTGAGGAAATTTCAGAAACTTCTTCACCTTGTTTCTCCAATAATGGGTCTAACAAGAAGCCTCAAAGAGGGGAAGATTTTGGTATATTACAAGCTCTGTTCAGCAAAGACATGGCTCTTATTTTCATTTCAACAGTTTCAGCTTGTGGTTCATCTGTTGCTGCCATTGATAATCTTGGACAAATCGCTGAGTCACTTAACTATCCACCTCAATCCATAAGTGTCTTCATTTCATGGGTTTCAATTTTTAATTTCTTTGGTCGGGTTTGCTCTGGTTTCGTCTCTGAAACTCTTATGATCAAATACAAATTACCTCGTCCTCTTATCTTCGGACTTACCCAAATTATAACTTGCATTGGTCTAATATCCATTGCTTTCCCTTATAAATATTCTGTTTATGTAGCTTCATTGATTATTGGGTTTGGGTTTGGAGCTCAAACTCCATTGCTATTTACCTTAATCTCTGATCTGTTTGGCCTTAAACATTACTCAACACTTCTGAATTGTGGGCAATTGGCAGTCCCATTTGGATCTTATATAATGAATGTGCATGTAGTAGGGAGGTTATACGATAAGGAAGCCATTAAAATTGGTAATGTGAAGAATGGGAAGGGGCTAACTTGCATTGGAACTCATTGCTTTAGTGAGTCTTTTGGAATTTTGATTGTGGTGACATTGTTTGGAGCGATGGCTTCGTTTGTGTTGGCTTATAGGACTCGAGAATTTTACAAAGGCGATATATATAAGAGATACAGAGATGATATGTGGGTTACTAAGAAGGACAATGAACATACAAAGAAGATTGGTGATGGAAACAAACAAGAGAAATTGCTCAACTAA 1695 38.11 MNCQFVKQVVQGRWFSVFASFLVMIGCGSPYLFGTYSKVLKTKFDYNQTQLSTLGFGKDLGSNLGIFAGLFAEVAPPWLLFLVGLTLNFFSYFMIWLSVTEYIPKPKLWLVFIYIFISSNAQNFPNTVVMVTNVRNFPDQRGIILGLLKGFVGLGGAILTQIYFSIYGNLDPIHLVLLLSWLPSIVYFLVFPSIRTIKAPKYPHELKVFYYFLYIAITIAIFILFLSITQRNIVFSHANYISGVSVIVLLLCLPLLIAIKEEFFLFKLNQQTKDPSVVVSIPVQKLEEISETSSPCFSNNGSNKKPQRGEDFGILQALFSKDMALIFISTVSACGSSVAAIDNLGQIAESLNYPPQSISVFISWVSIFNFFGRVCSGFVSETLMIKYKLPRPLIFGLTQIITCIGLISIAFPYKYSVYVASLIIGFGFGAQTPLLFTLISDLFGLKHYSTLLNCGQLAVPFGSYIMNVHVVGRLYDKEAIKIGNVKNGKGLTCIGTHCFSESFGILIVVTLFGAMASFVLAYRTREFYKGDIYKRYRDDMWVTKKDNEHTKKIGDGNKQEKLLN 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2033773 2035467 + Lsi03G001420.1 Lsi03g00142 657892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00142 564 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4 3 541 - -
Lsi03g00142 564 SUPERFAMILY MFS general substrate transporter 13 195 IPR036259 -
Lsi03g00142 564 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Lsi03g00142 564 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 3 541 - -
Lsi03g00142 564 SUPERFAMILY MFS general substrate transporter 210 526 IPR036259 -
Lsi03g00142 564 Pfam Nodulin-like 13 259 IPR010658 -
Lsi03g00142 564 Gene3D MFS general substrate transporter like domains 323 562 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00142 Lsi-Chr3:2033773 Lsi03g00144 Lsi-Chr3:2064238 0 dispersed
Lsi03g00141 Lsi-Chr3:2026021 Lsi03g00142 Lsi-Chr3:2033773 0 tandem
Lsi03g00142 Lsi-Chr3:2033773 Lsi03g00143 Lsi-Chr3:2039608 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00142 - - csv:101205122 904.049