Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00143 ATGGGCTCGAACCGTGGCGTAGAAAGTTGGCGGTTTGTGAAGCAAGTTATCGAAGGACGATGGTTTTCGGTATTCGCCGCATTCCTCATCATGATCGGTTGTGGTTCAACTTACTTATTTGGAACATACTCTAAACTTTTAAAGACCAAATTTGATTACAATCAAACCCAACTTAGCTCCTTGGGATTCGCTAAAGATCTCGGTGCCAACCTCGGAGTATTCGCCGGACTTTTTGCTGAGGTGGCTCCGCCGTGGATGCTTTTCCTTGTAGGCTTAACCCTCAACTTCCTCAGCTACTTCATGATCTGGCTATCCGTTACCGGGCATGTCACAAAGCCCGAATTCTGGCTAATGTTTATTTACATCTACATTTCTGCTAATGCACAAAACTTTGCCAATACTGCCGTCATGGTAACTAGTGTCAGAAATTTCCCTGATCAACGAGGCATCATTTTGGGCCTTCTCAAGGGCTTTGTGGGCCTTGGTGGGGCTATTTTAACTCAAATCTATTTTGGCATTTATGGCAACCAAGATCCTGTTCATCTTCTCCTCCTTCTTTCATGGCTACCTTCCGTAGTATGTTTCTTGTTTTTTCTTTCATTTCGAACAATCAAAGCTCGGAAGCATCCACAAGAGCTCAAAGTATTCTACCAATTACTTTACATCTCCATAACAATGGCAGTCTTCATCTTGTTTCTCACCATAACCCAAAAAAACACTCCTTTCTCTCATGCTAATTATATCGGTGGTGTGTCCGTCATCGTTCTCTTACTCTGTCTCCCTCTTTTGATTGCTATTAAAGAAGAATTGTTTCTCTTCAAACTCAATAAACAAACCAAGGATCCTTCAGTTGTGGTTTCAATTCCTGTTCAGAAACTTGAGGAAATTTCAGAAACTTCTTCACCTTGTATCTCCAATAATGGGTCTAACAAGAGGCCTCAAAGAGGGGAAGATTTTGGTATATTACAAGCTCTGTTCAGCAAAGACATGGCTCTTATTTTCATAGCAACAGTTTCAGCTTGTGGTTCATCTGTTGCTGCCATTGATAATCTTGGACAAATCGCTGAATCACTTAACTACCCATCTCAATCCATAAGTGTCTTCGTTTCGTGGATTTCAATTTTCAATTTCTTTGGTCGGGTTTGCTCTGGTTTCGTCTCTGAAACTCTTATGACCAAATACAAATTACCTCGTCCTCTTATGTTTGGTCTTGCCCAAGTTATCACTTGCATTGGTCTAATCTCCATTGCCTTTCCTTTTACAAATTCAGTGTATGCAGCTTCTTTGATTATTGGGTTTGGGTTTGGAGCTCAAACTCCATTGCTATTTACCTTAATCTCTGATCTGTTTGGCCTGAAACATTACTCCACGCTTCTGAATTGTGGGCAATTGGCAGTCCCATTTGGATCTTATTTAATGAATGTGCATGTAGTAGGGAAGTTTTACGATCGGGAAGCTACTAAAATTGGTAATGTGAAGAATGGGAAGGGGCTAACTTGCACTGGAACTCATTGCTTTAGTGAGTCATTTGGAATTTTGGTTATAGTGACATTGTTTGGAGCGATGGCGTCATTTCTGTTGGCTTACAGAACTCGAGAGTTTTACAAAGGGGATATATACAAGAGATACAGAGATGATCAAATGTGGACTACTCAATCGGATGTGGAATTATATTCTTCAGATAATAAGAAGATTAATGAACATAGAAAGAACATTGATGATCATGATGGAAGCAAATTTGTCTGTAAATAG 1752 40.24 MGSNRGVESWRFVKQVIEGRWFSVFAAFLIMIGCGSTYLFGTYSKLLKTKFDYNQTQLSSLGFAKDLGANLGVFAGLFAEVAPPWMLFLVGLTLNFLSYFMIWLSVTGHVTKPEFWLMFIYIYISANAQNFANTAVMVTSVRNFPDQRGIILGLLKGFVGLGGAILTQIYFGIYGNQDPVHLLLLLSWLPSVVCFLFFLSFRTIKARKHPQELKVFYQLLYISITMAVFILFLTITQKNTPFSHANYIGGVSVIVLLLCLPLLIAIKEELFLFKLNKQTKDPSVVVSIPVQKLEEISETSSPCISNNGSNKRPQRGEDFGILQALFSKDMALIFIATVSACGSSVAAIDNLGQIAESLNYPSQSISVFVSWISIFNFFGRVCSGFVSETLMTKYKLPRPLMFGLAQVITCIGLISIAFPFTNSVYAASLIIGFGFGAQTPLLFTLISDLFGLKHYSTLLNCGQLAVPFGSYLMNVHVVGKFYDREATKIGNVKNGKGLTCTGTHCFSESFGILVIVTLFGAMASFLLAYRTREFYKGDIYKRYRDDQMWTTQSDVELYSSDNKKINEHRKNIDDHDGSKFVCK 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2039608 2041359 - Lsi03G001430.1 Lsi03g00143 657893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00143 583 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 34 - -
Lsi03g00143 583 SUPERFAMILY MFS general substrate transporter 21 533 IPR036259 -
Lsi03g00143 583 Gene3D MFS general substrate transporter like domains 15 214 IPR036259 -
Lsi03g00143 583 Pfam Nodulin-like 20 266 IPR010658 -
Lsi03g00143 583 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4 4 549 - -
Lsi03g00143 583 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 4 549 - -
Lsi03g00143 583 Gene3D MFS general substrate transporter like domains 330 578 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00143 Lsi-Chr3:2039608 Lsi03g00145 Lsi-Chr3:2070230 0 dispersed
Lsi03g00142 Lsi-Chr3:2033773 Lsi03g00143 Lsi-Chr3:2039608 0 tandem
Lsi03g00143 Lsi-Chr3:2039608 Lsi03g00144 Lsi-Chr3:2064238 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00143 - - csv:101204873 968.763