Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00144 ATGATTGGCGCAGGTTCAACTTACGTTTTTGGTACATACTCCAAAACAATGAAAACCCAATTCGATTACAACCAAACCCAAATCAACACATTGGGATTTGCCAAAGATCTCGGCTCTAACCTCGGTGTTTTCGCCGGCCTTCTCGGCGAGGTGGCGCCGCCGTGGGTTCTGTTCATCGTCGGTTCATCTCTCAATTTCTACAGCTACTTCATGATTTGGCTCTCCGTTACTCGTCGTATCGCCAAGCCCCAACTTTGGCAAATGTTCCTTTACATTTGCTTAGCTGCTAATTCACAAAATTTCGCTAATACAGCCGTTTTAGTAACCAGCGTCAGGAATTTCCCTGATCGACGAGGAATAATTCTTGGACTTCTTAAAGGGTTTGTTGGAATTGGAGGTGCCATTTTAACTCAATTCTATTTAGCCATTTATGGCCATGAAAATCCAGCTAGTTTGGTGCTTCTTCTTGCATGGTTCCCCACTTTTGTGTCTTTGGTATTTTCTCTCACGATTCGAACAATTAATATCCGTAAACATCCTGAAGAACTCAGAGTTCTTTACCATTTGCTTTATGTTTCAATAATTCTTGCTCTGTTTCTCTTATTTCTAACCATTACCCAAAAACAAGCTGTGTTTTCTTCAGTTGGGTATATAAGTGGAGCTGCCGTCATTGTTGGGTTACTATCTATTCCCCTTTTAATCGCCATTAGAGAAGAACTCGTGCTCTTCAAACTCAACAAACAAACTAATAATAATCCATCCGCCCCTGTTTTCATTCCTGAATTGAAAGCTTCAACAAATTCCCCATCTACAAATATTGATACTTCCTTAACCCCACTTGAAGAAATTTCAGAAACTAATTCACCGTCATGTTTCTCAAACATATTCGAGAAACCAGAAAGAGGAGAAGATTACACTATTTTACAAGCTCTGTTCAGCAAAGACATGGCACTTGTTTTCATGGGAACACTTTGTGGGTGTGGTTCATCAATTGCCGCCATTGACAACATAGGCCAAATTGGTGAATCACTTGGCTACCCATCTCAATCCATAAGCATCTTCGTTTCATGGGTTTCTATATTCAATTTCTTCGGCAGAGTATGCTCTGGTTTCATCTCTGAAACTCTTATGACAAAATACAAATTACCTCGTCCTTTAATGTTTGCTTTCTCCCATCTTCTCACCTGCATTGGAATGCTTTTCATTGCCTTCCCATATTCTGGATCAGTCTACGTAGCTTCATTGATAATCGGGTTCGGATTCGGAGCTCAAGTTCCGATGGTTTTCGCCATAGTTTCAGAGCTTTTCGGGTTGAAACATTACGCAACAATCTTCAATTGTGCACAATTGGCAGTCCCAATTGGATCATATGTGCTGAATGTGGATGTAATTGGGAGATTATATGATTTTGAAGCAGTAAAAGATGGTGGAATTAAGAATGGGAAAGGATTAACTTGCAATGGAGCTCATTGTTTTAGTGGGTCGTTCTTGATTTTGGCTGTGGTGGTGTTGATTGGAGCTTTGGCTTCGCTTGTGTTGGCTTTTAGGACAAAAGATTTTTACAAAGGGGATGTTTATAAGAAATATAGAGAGGATATGTGGATTCCTCAATCGGATATGGAATTTTATTGTTTAGATAACAAGAAGAAAGTTGTTAACAATATGCCAAGGATTGTCATGCCGCCTAAATATAGTTTTCTCAATATAATATAG 1713 39.58 MIGAGSTYVFGTYSKTMKTQFDYNQTQINTLGFAKDLGSNLGVFAGLLGEVAPPWVLFIVGSSLNFYSYFMIWLSVTRRIAKPQLWQMFLYICLAANSQNFANTAVLVTSVRNFPDRRGIILGLLKGFVGIGGAILTQFYLAIYGHENPASLVLLLAWFPTFVSLVFSLTIRTINIRKHPEELRVLYHLLYVSIILALFLLFLTITQKQAVFSSVGYISGAAVIVGLLSIPLLIAIREELVLFKLNKQTNNNPSAPVFIPELKASTNSPSTNIDTSLTPLEEISETNSPSCFSNIFEKPERGEDYTILQALFSKDMALVFMGTLCGCGSSIAAIDNIGQIGESLGYPSQSISIFVSWVSIFNFFGRVCSGFISETLMTKYKLPRPLMFAFSHLLTCIGMLFIAFPYSGSVYVASLIIGFGFGAQVPMVFAIVSELFGLKHYATIFNCAQLAVPIGSYVLNVDVIGRLYDFEAVKDGGIKNGKGLTCNGAHCFSGSFLILAVVVLIGALASLVLAFRTKDFYKGDVYKKYREDMWIPQSDMEFYCLDNKKKVVNNMPRIVMPPKYSFLNII 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2064238 2065950 + Lsi03G001440.1 Lsi03g00144 657894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00144 570 CDD MFS_Mch1p_like 1 507 - -
Lsi03g00144 570 Gene3D MFS general substrate transporter like domains 289 521 IPR036259 -
Lsi03g00144 570 SUPERFAMILY MFS general substrate transporter 3 519 IPR036259 -
Lsi03g00144 570 Pfam Nodulin-like 4 236 IPR010658 -
Lsi03g00144 570 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 1 532 - -
Lsi03g00144 570 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4 1 532 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00142 Lsi-Chr3:2033773 Lsi03g00144 Lsi-Chr3:2064238 0 dispersed
Lsi03g00144 Lsi-Chr3:2064238 Lsi04g00096 Lsi-Chr4:1102253 1.82E-180 dispersed
Lsi03g00143 Lsi-Chr3:2039608 Lsi03g00144 Lsi-Chr3:2064238 0 tandem
Lsi03g00144 Lsi-Chr3:2064238 Lsi03g00145 Lsi-Chr3:2070230 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00144 - - cmo:103502570 964.14