Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi03g00151 | ATGGCTAAGAAGGACGATTCTGCAAGAGCTCCACTTCAACGCCCCACTATTACTCTGCCGCCGCGTCCTTCTATGGAGGCTTTTTTCTCTGGCGGCCCCACTGGCCTTAGCCCTGGCCCTATGACTCTTCTCTCCAGTTACTTCGCCGACGGTGCCGTTGACTCACCCTCCTTCTCCCAGCTTCTCGCCGGAGCTATGGCTTCTCCCATGGCTATGGGGTTTTTCGGAACTGGGTCCACTCCCAATTATTACGCCAAGGATGGAGCCGCCTCGGAATTGGAATTTGGGATGAAACAATCGAAGCCGGTGAATTTAATGGTAGCTCGGTCTCCTTTGTTCTCGGTCCCGCCAGGGCTTAGTCCTTCTGGCTTGCTTAATTCGCCGGGCTTTTATCCTCCTCAGAGTCCATTTGGAATGTCGCACCAGCAGGCATTGGCTCAGGTTACTGCTCAAGCAGCATTAGCACATTCTCATATGCATATGCAGCAAGCTGAATATCAACATTCTTCGGTACCAGCTCCTACAGAACCGTTGACACGGGACCCATCATTTTCTCTTGACGAAGCATCTCAACTGGCCATATTACCCTCCACATCAGACACAAAAAGTCTGATTGCAGAATCGACAGAAGTCTCTCATTCTGATAGAAAATATCAACCTCCTCCTCCCCACGTCTCTGATAAACCTGCAGATGATGGCTATAACTGGCGTAAATATGGACAGAAGTTGGTTAAGGGCAGTGAATATCCACGAAGCTATTACAAATGCACTCATTTGAATTGCCCTGTAAAGAAGAAGATCGAGCGCTCACCTGATGGTCAAATTACTGAAATTATTTACAAAGGCCAGCACAACCATGAACCTCCTCCAGCCAACAAACGTGCAAGAGATAATAGCGAACCAACTGGATGTACAAATTCTTTGATAAAGCCCGAATGTGGTTTGCAAAATCAAGCTGGAATTTTGAACAAGTCAAGTGAAAATGTGCAATTAGGATCTAGTGACAGTGAAGAACGAGCTGATACAGAGATTACGGATGACAGGGATGAAGATGAGCCAAATCCAAAGAGGCAGAACATTGACGCAGGGACATCTGGTGTTGCCTTGTCACATAAAACACTCACAGAACCAAAAATCATTGTTCAAACAAGAAGTGAGGTTGACCTGTTAGATGACGGCTATAGGTGGCGCAAGTACGGGCAGAAAGTGGTTAAAGGAAATCCTAATCCTAGGAGCTACTACAAATGCACTAGTGCTGGGTGCAACGTCCGAAAGCATGTCGAGAGATCTTCAACAGACTCGAAAGCTGTTGTAACTACATACGAAGGGAAACATAACCACGATGTTCCTGCAGCTAGAAACAGCAGCCACCACGCAGTCAACAATACTGTCCCCCAGATCAAACCACACAAAGTTGTAGCTCAGAAACATCCATTACTTAAAGAGATGGAATTTGGAACTAATGACCAGAGACCTGCCGTTTTGCGGCTTAAAGAAGAGCAAATCACCGTGTAA | 1515 | 46.73 | MAKKDDSARAPLQRPTITLPPRPSMEAFFSGGPTGLSPGPMTLLSSYFADGAVDSPSFSQLLAGAMASPMAMGFFGTGSTPNYYAKDGAASELEFGMKQSKPVNLMVARSPLFSVPPGLSPSGLLNSPGFYPPQSPFGMSHQQALAQVTAQAALAHSHMHMQQAEYQHSSVPAPTEPLTRDPSFSLDEASQLAILPSTSDTKSLIAESTEVSHSDRKYQPPPPHVSDKPADDGYNWRKYGQKLVKGSEYPRSYYKCTHLNCPVKKKIERSPDGQITEIIYKGQHNHEPPPANKRARDNSEPTGCTNSLIKPECGLQNQAGILNKSSENVQLGSSDSEERADTEITDDRDEDEPNPKRQNIDAGTSGVALSHKTLTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCNVRKHVERSSTDSKAVVTTYEGKHNHDVPAARNSSHHAVNNTVPQIKPHKVVAQKHPLLKEMEFGTNDQRPAVLRLKEEQITV | 504 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 2121727 | 2127010 | - | Lsi03G001510.1 | Lsi03g00151 | 657901 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi03g00151 | 504 | PANTHER | WRKY TRANSCRIPTION FACTOR 73 | 331 | 503 | - | - | |
Lsi03g00151 | 504 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 331 | 503 | IPR044810 | GO:0003700 | |
Lsi03g00151 | 504 | Gene3D | WRKY domain | 375 | 451 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi03g00151 | 504 | Gene3D | WRKY domain | 223 | 290 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi03g00151 | 504 | MobiDBLite | consensus disorder prediction | 195 | 234 | - | - | |
Lsi03g00151 | 504 | SUPERFAMILY | WRKY DNA-binding domain | 227 | 289 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi03g00151 | 504 | MobiDBLite | consensus disorder prediction | 326 | 369 | - | - | |
Lsi03g00151 | 504 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Lsi03g00151 | 504 | Pfam | WRKY DNA -binding domain | 391 | 447 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi03g00151 | 504 | Pfam | WRKY DNA -binding domain | 231 | 287 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi03g00151 | 504 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 9 | 325 | IPR044810 | GO:0003700 | |
Lsi03g00151 | 504 | ProSiteProfiles | WRKY domain profile. | 385 | 450 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi03g00151 | 504 | SMART | WRKY_cls | 230 | 288 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi03g00151 | 504 | SMART | WRKY_cls | 390 | 449 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi03g00151 | 504 | SUPERFAMILY | WRKY DNA-binding domain | 382 | 450 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi03g00151 | 504 | PANTHER | WRKY TRANSCRIPTION FACTOR 73 | 9 | 325 | - | - | |
Lsi03g00151 | 504 | ProSiteProfiles | WRKY domain profile. | 225 | 289 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi03g00151 | 504 | MobiDBLite | consensus disorder prediction | 281 | 310 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi03g00151 | Lsi-Chr3:2121727 | Lsi04g00386 | Lsi-Chr4:3802108 | 5.02E-154 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24952 | PF03106 | WRKY | 3.20E-25 | CL0274 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi03g00151 | - | - | csv:101223114 | 963.755 |