Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00151 ATGGCTAAGAAGGACGATTCTGCAAGAGCTCCACTTCAACGCCCCACTATTACTCTGCCGCCGCGTCCTTCTATGGAGGCTTTTTTCTCTGGCGGCCCCACTGGCCTTAGCCCTGGCCCTATGACTCTTCTCTCCAGTTACTTCGCCGACGGTGCCGTTGACTCACCCTCCTTCTCCCAGCTTCTCGCCGGAGCTATGGCTTCTCCCATGGCTATGGGGTTTTTCGGAACTGGGTCCACTCCCAATTATTACGCCAAGGATGGAGCCGCCTCGGAATTGGAATTTGGGATGAAACAATCGAAGCCGGTGAATTTAATGGTAGCTCGGTCTCCTTTGTTCTCGGTCCCGCCAGGGCTTAGTCCTTCTGGCTTGCTTAATTCGCCGGGCTTTTATCCTCCTCAGAGTCCATTTGGAATGTCGCACCAGCAGGCATTGGCTCAGGTTACTGCTCAAGCAGCATTAGCACATTCTCATATGCATATGCAGCAAGCTGAATATCAACATTCTTCGGTACCAGCTCCTACAGAACCGTTGACACGGGACCCATCATTTTCTCTTGACGAAGCATCTCAACTGGCCATATTACCCTCCACATCAGACACAAAAAGTCTGATTGCAGAATCGACAGAAGTCTCTCATTCTGATAGAAAATATCAACCTCCTCCTCCCCACGTCTCTGATAAACCTGCAGATGATGGCTATAACTGGCGTAAATATGGACAGAAGTTGGTTAAGGGCAGTGAATATCCACGAAGCTATTACAAATGCACTCATTTGAATTGCCCTGTAAAGAAGAAGATCGAGCGCTCACCTGATGGTCAAATTACTGAAATTATTTACAAAGGCCAGCACAACCATGAACCTCCTCCAGCCAACAAACGTGCAAGAGATAATAGCGAACCAACTGGATGTACAAATTCTTTGATAAAGCCCGAATGTGGTTTGCAAAATCAAGCTGGAATTTTGAACAAGTCAAGTGAAAATGTGCAATTAGGATCTAGTGACAGTGAAGAACGAGCTGATACAGAGATTACGGATGACAGGGATGAAGATGAGCCAAATCCAAAGAGGCAGAACATTGACGCAGGGACATCTGGTGTTGCCTTGTCACATAAAACACTCACAGAACCAAAAATCATTGTTCAAACAAGAAGTGAGGTTGACCTGTTAGATGACGGCTATAGGTGGCGCAAGTACGGGCAGAAAGTGGTTAAAGGAAATCCTAATCCTAGGAGCTACTACAAATGCACTAGTGCTGGGTGCAACGTCCGAAAGCATGTCGAGAGATCTTCAACAGACTCGAAAGCTGTTGTAACTACATACGAAGGGAAACATAACCACGATGTTCCTGCAGCTAGAAACAGCAGCCACCACGCAGTCAACAATACTGTCCCCCAGATCAAACCACACAAAGTTGTAGCTCAGAAACATCCATTACTTAAAGAGATGGAATTTGGAACTAATGACCAGAGACCTGCCGTTTTGCGGCTTAAAGAAGAGCAAATCACCGTGTAA 1515 46.73 MAKKDDSARAPLQRPTITLPPRPSMEAFFSGGPTGLSPGPMTLLSSYFADGAVDSPSFSQLLAGAMASPMAMGFFGTGSTPNYYAKDGAASELEFGMKQSKPVNLMVARSPLFSVPPGLSPSGLLNSPGFYPPQSPFGMSHQQALAQVTAQAALAHSHMHMQQAEYQHSSVPAPTEPLTRDPSFSLDEASQLAILPSTSDTKSLIAESTEVSHSDRKYQPPPPHVSDKPADDGYNWRKYGQKLVKGSEYPRSYYKCTHLNCPVKKKIERSPDGQITEIIYKGQHNHEPPPANKRARDNSEPTGCTNSLIKPECGLQNQAGILNKSSENVQLGSSDSEERADTEITDDRDEDEPNPKRQNIDAGTSGVALSHKTLTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCNVRKHVERSSTDSKAVVTTYEGKHNHDVPAARNSSHHAVNNTVPQIKPHKVVAQKHPLLKEMEFGTNDQRPAVLRLKEEQITV 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2121727 2127010 - Lsi03G001510.1 Lsi03g00151 657901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00151 504 PANTHER WRKY TRANSCRIPTION FACTOR 73 331 503 - -
Lsi03g00151 504 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 331 503 IPR044810 GO:0003700
Lsi03g00151 504 Gene3D WRKY domain 375 451 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi03g00151 504 Gene3D WRKY domain 223 290 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi03g00151 504 MobiDBLite consensus disorder prediction 195 234 - -
Lsi03g00151 504 SUPERFAMILY WRKY DNA-binding domain 227 289 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi03g00151 504 MobiDBLite consensus disorder prediction 326 369 - -
Lsi03g00151 504 MobiDBLite consensus disorder prediction 1 33 - -
Lsi03g00151 504 Pfam WRKY DNA -binding domain 391 447 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi03g00151 504 Pfam WRKY DNA -binding domain 231 287 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi03g00151 504 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 9 325 IPR044810 GO:0003700
Lsi03g00151 504 ProSiteProfiles WRKY domain profile. 385 450 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi03g00151 504 SMART WRKY_cls 230 288 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi03g00151 504 SMART WRKY_cls 390 449 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi03g00151 504 SUPERFAMILY WRKY DNA-binding domain 382 450 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi03g00151 504 PANTHER WRKY TRANSCRIPTION FACTOR 73 9 325 - -
Lsi03g00151 504 ProSiteProfiles WRKY domain profile. 225 289 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi03g00151 504 MobiDBLite consensus disorder prediction 281 310 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00151 Lsi-Chr3:2121727 Lsi04g00386 Lsi-Chr4:3802108 5.02E-154 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24952 PF03106 WRKY 3.20E-25 CL0274 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00151 - - csv:101223114 963.755