Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00156 ATGCCTTCTTTCCTCTCACCTTCTTCCATGTGGAGCGAGCTTTGCCTGAGGCCAACACCGCCTCCACTCAATGCCCCCGATGAAACCCCCGTCGAATGCTACGCCTGCACTCAAGTCGGCGTTCCAGCCTTCCACTCCACCAGCTGCGACCACGCCCACCAGCAACCCGAATGGGAAGCCTCCGCCGGTTCTTCCCTCGTCCCCATTCAGCCTACCAAACCCTCCCCATCTCGCCGCCCCGCACTGCGACATCCTTCCGGTTGCTTCGGCACCGTTCTCGACCCTAGAACCAAGCCGGTCCAGAGATGGAACCGGGTTCTCTTATTGGCTCGTGGAATGGCTCTCGCTGTTGATCCTCTCTACTTCTACGCACTGTCTATTGGAAGAGGAGGCTCCCCCTGCCTCTACATGGACGGTGGGTTGGCCGCCGTTGTCACCGTCCTCCGCACGTGCCTCGATTTCGTGCACTTGTGGCACGTTTGGCTTCAATTCCGCCTCGCCTACGTGTCCAGAGAGAGTATGGTGATTGGCTGCGGGAAACTCGTGTGGGACGCACGTGCTATCGCCTCTCATTACGTTCGTTCCTTCAAAGGCTTCTGGTTTGATGCCTTCGTTATCCTCCCCGTTCCTCAGATTGTTTATTGGTTTGTTTTGCCAAAACTGATCAGAGAAGAGAGAATAAAACTTATAATGACAGTTATCTTATTAATGTTCTTGTTCCAATTCCTCCCAAAAGTTTACCACTCCATTATTTTAATGAGAAGAATGCAGAAGGTCACTGGATACATCTTTGGCACCATTTGGTGGGGTTTTGGCCTCAATCTCATTGCCTATTTCATTGCTTCTCATGTTGCTGGGGGTTGCTGGTATGTTCTTGCAATACAGCGAGTTGCTTCTTGCATCCAGCAACATTGTGAGAGAAACAAGTGCAACCTATCTCTGTCATGCTCTGAGGAGGTGTGTTATCAGTTTATCTCATCAGCTACAACAATTGGAAGTTCGTGTGGTCGCAATTCGACTGCTACATTTAGGAAGCCGCTATGCTTGGATGTTAAAGGTCCATTCGCCTATGGCATCTACAAGTGGGCTCTTCCAGTCATTTCCAGCAATTCAGTTGCGGTCAAAGTCCTTTATCCCATCTTTTGGGGATTAATGACTCTCAGTACCTTTGGCAATGATCTCGAGCCTACAAGTAATTGGCTGGAAGTATGCTTCAGTATTTGCACGGTGCTCAGTGGACTGCTGCTTTTCACTCTTTTGATTGGTACTTTTGCACGCTGTCATGGCAAGAAGGCGGAAAATGCAGCTGAGATGTCGAGATTTGGAGTGGTGGATGAGGAGACGACAATTGCCGTCTCGTTTGAGACAACGAGTTCGACACTACGAACACCAGAGATGGGCAGCCATGGGCGGAGAAGATGA 1422 50.49 MPSFLSPSSMWSELCLRPTPPPLNAPDETPVECYACTQVGVPAFHSTSCDHAHQQPEWEASAGSSLVPIQPTKPSPSRRPALRHPSGCFGTVLDPRTKPVQRWNRVLLLARGMALAVDPLYFYALSIGRGGSPCLYMDGGLAAVVTVLRTCLDFVHLWHVWLQFRLAYVSRESMVIGCGKLVWDARAIASHYVRSFKGFWFDAFVILPVPQIVYWFVLPKLIREERIKLIMTVILLMFLFQFLPKVYHSIILMRRMQKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCWYVLAIQRVASCIQQHCERNKCNLSLSCSEEVCYQFISSATTIGSSCGRNSTATFRKPLCLDVKGPFAYGIYKWALPVISSNSVAVKVLYPIFWGLMTLSTFGNDLEPTSNWLEVCFSICTVLSGLLLFTLLIGTFARCHGKKAENAAEMSRFGVVDEETTIAVSFETTSSTLRTPEMGSHGRRR 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2155704 2159500 - Lsi03G001560.1 Lsi03g00156 657906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00156 473 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 2-LIKE 37 423 - -
Lsi03g00156 473 SUPERFAMILY Voltage-gated potassium channels 95 425 - -
Lsi03g00156 473 Pfam Ion transport protein 103 424 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lsi03g00156 473 MobiDBLite consensus disorder prediction 60 90 - -
Lsi03g00156 473 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 37 423 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00156 Lsi-Chr3:2155704 Lsi07g00120 Lsi-Chr7:1352537 6.19E-136 dispersed
Lsi03g00156 Lsi-Chr3:2155704 Lsi03g01408 Lsi-Chr3:25030619 1.66E-50 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00156 K05391 - csv:101203560 796.193