Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00181 ATGGAATTGGATGGATACTTGTTGCATTTATGCATTACCACGCATAATTGTAGGCTTGATAAAGCAAAATTTTATGGCGTAGGAGCTGGTCTCTTTACTGGGATTACAGTTGCACTGTACCCTGTTTCTGTTGTAAAAACGAGGATGCAGGTTGCTGTAAAGGATTCTGCCGAGAAAAATGCCCTGTCTGTTATTAAAGGCTTGCTGAAGAATGATGGGGTTCCTGGTCTTTATAGAGGGTTCGGCACAGTAATCACTGGTGCAATTCCTGCAAGGATAATCTTTCTTACTGCTTTGGAGACGACCAAAGTGGGAGCCTATAAACTGGTTGAGCCATTTAAATTTTCTGAACCTACACAGGCTGCTATGGCAAATGGGTTAGCTGGCATGACTGCATCACTTTTTTCTCAAGCTGTTTTCGTTCCAATTGATGTGATTAGTCAAAAGCTCATGGTTCAAGGATACTCGGGAAATACAAGATATAATGGGGGTTTAGATGTTGCTCGTAAACTGATAAAGTCTGATGGGATCCGGGGATTGTATAAAGGTTTTGGGTTATCTGTTATGACCTACTCTCCATCTAGTGCTGTGTGGTGGGCAAGTTATGGTGCAAGTCAACGCATCATCTGGAGGTTTTTGGGTCAAAACTCTGCTTCTGAGAAATTTTCTCCTAGCCATACCCAACTTATTTCAGTTCAAGCTGCGGGTGGAATAATTGCAGGTGCGACAGCTTCCTGCATTACAACACCTTTGGACACTATAAAGACTCGCTTACAGGTGATGGGTGATAAAGGGAAGACAGCAAGACAAATTGTTGAAAGCTTAATCGCTGAGGATGGATGGAAAGGTTTTTATAGGGGGCTGGGTCCTCGGTTCTTCAGCATGTCGGCCTGGGGAACCTCAATGATATTGGCTTACGAGTATTTGAGTATGGACTTCTCACTATATTAG 951 43.01 MELDGYLLHLCITTHNCRLDKAKFYGVGAGLFTGITVALYPVSVVKTRMQVAVKDSAEKNALSVIKGLLKNDGVPGLYRGFGTVITGAIPARIIFLTALETTKVGAYKLVEPFKFSEPTQAAMANGLAGMTASLFSQAVFVPIDVISQKLMVQGYSGNTRYNGGLDVARKLIKSDGIRGLYKGFGLSVMTYSPSSAVWWASYGASQRIIWRFLGQNSASEKFSPSHTQLISVQAAGGIIAGATASCITTPLDTIKTRLQVMGDKGKTARQIVESLIAEDGWKGFYRGLGPRFFSMSAWGTSMILAYEYLSMDFSLY 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2374026 2379315 - Lsi03G001810.1 Lsi03g00181 657931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00181 316 PRINTS Mitochondrial carrier protein signature 237 259 IPR002067 GO:0055085
Lsi03g00181 316 PRINTS Mitochondrial carrier protein signature 181 199 IPR002067 GO:0055085
Lsi03g00181 316 PRINTS Mitochondrial carrier protein signature 37 51 IPR002067 GO:0055085
Lsi03g00181 316 ProSiteProfiles Solute carrier (Solcar) repeat profile. 120 208 IPR018108 -
Lsi03g00181 316 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 18 310 - -
Lsi03g00181 316 Gene3D Mitochondrial carrier domain 24 314 IPR023395 -
Lsi03g00181 316 Pfam Mitochondrial carrier protein 26 104 IPR018108 -
Lsi03g00181 316 Pfam Mitochondrial carrier protein 122 209 IPR018108 -
Lsi03g00181 316 Pfam Mitochondrial carrier protein 234 309 IPR018108 -
Lsi03g00181 316 ProSiteProfiles Solute carrier (Solcar) repeat profile. 20 105 IPR018108 -
Lsi03g00181 316 SUPERFAMILY Mitochondrial carrier 20 309 IPR023395 -
Lsi03g00181 316 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 18 310 - -
Lsi03g00181 316 ProSiteProfiles Solute carrier (Solcar) repeat profile. 228 312 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02914 Lsi-Chr2:35350355 Lsi03g00181 Lsi-Chr3:2374026 7.31E-83 dispersed
Lsi03g00181 Lsi-Chr3:2374026 Lsi05g01397 Lsi-Chr5:21810658 3.91E-102 dispersed
Lsi03g00181 Lsi-Chr3:2374026 Lsi04g01400 Lsi-Chr4:21784232 5.10E-78 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00181 K15121 - csv:101206140 556.984