Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00183 ATGGCGTTGGCCATGGTGATTCTTGCTCTGTTTTTACTTCTCTGTTTTTGCTCTGCTTTGCTGCGATGGAATGAAGTTCGATATAGCAAAAAAGGGTTGCCTCCTGGTACAATGGGATGGCCTGTTTTTGGGGAAACTACTGAGTTTCTTAAACAAGGTCCAAACTTTATGAAATCTCAAAGAGCAAGGTATGGGAGCATTTTCAAGTCCCATATTTTGGGGTGTCCTACGATTGTTTCTATGGATCCAGAGGTTAATAGATATGTTTTAATGAATGAATCAAAAGGGCTTGTCCCTGGTTACCCTCAATCCATGCTTGACATACTTGGCAAATGTAATATCGCCGCCGTCCATGGCGGCGCCCACAAGCTCATGAGAGGTGCTCTGCTTGCTATTGTTAGCCCCACCATGATTAAAGACCGTCTTCTTCCTAAAGTTGATGACTTTATGCGATCCCATTTGAGGAATTGGGATCGCCAAATCATTGATATACAAGAAAAGACTAAAGAGATGGCTCTCCGATCATCTTTGAAGCAGATTGCCGGAATCGAGTCCGGTCCGTTATCGGAATCTTTCATCCCGGAGTTCTTCAAGCTCGTCCTCGGCACCCTTTCGCTCCCCATCGATCTTCCCGGCACGAACTACCGCCGAGGAATTCAGGCGAGAAAGAACATAATAAAGCTGTTGCAGCAGCTGATAAACGAGAGAAGAGACTCAAAGATACAAAAAGATGACATGCTTGGGTATTTTATGAGTGAGGAGAACAAATATAAGCTAAACGATGAAGAGATTATTGATCAAATCATCACTGTATTGTACTCTGGCTATGAAACTGTTTCAACAACTTCTATGATGGCTGTAAAGTTTCTCCATGATCATCCCAAAGTTCTTCAGCAACTCAGAGAAGAGCATTTGGCAATCAGAGAGAAGAAAAATCCTGAGGACCCCATTGATTGGGATGATCTTAAAGCCATGAAGTTCACTCGTGCGGTGATATTTGAAACATCAAGGCTGGCCACTATTGTTAATGGGGTTTTGAGGAAAACTACAAAGGACATGGAACTAAATGGCTTTCTCATTCCAAAAGGATGGAGGATTTATGTATATACTAGAGAGATAAACTATGACCCTTTTCTCTATTCTGAACCATTCACCTTCAACCCTTGGAGATGGCTGGACAAAAACTTAGAGTCCCATAATTACTTCTTCATCTTTGGAGGTGGAACTAGACATTGTCCTGGCAAAGAATTGGGAATTGCAGAGATTTCTACTTTTTTACATTACTTTGTAACTAAATACAGGTGGGAAGAAGTTGGAGGAGATAAGCTCTTGAAATTTCCAAGAGTGGAAGCTCCAAGTGGGTTCCACATTAGGGTTTCATCTTACTGA 1389 41.97 MALAMVILALFLLLCFCSALLRWNEVRYSKKGLPPGTMGWPVFGETTEFLKQGPNFMKSQRARYGSIFKSHILGCPTIVSMDPEVNRYVLMNESKGLVPGYPQSMLDILGKCNIAAVHGGAHKLMRGALLAIVSPTMIKDRLLPKVDDFMRSHLRNWDRQIIDIQEKTKEMALRSSLKQIAGIESGPLSESFIPEFFKLVLGTLSLPIDLPGTNYRRGIQARKNIIKLLQQLINERRDSKIQKDDMLGYFMSEENKYKLNDEEIIDQIITVLYSGYETVSTTSMMAVKFLHDHPKVLQQLREEHLAIREKKNPEDPIDWDDLKAMKFTRAVIFETSRLATIVNGVLRKTTKDMELNGFLIPKGWRIYVYTREINYDPFLYSEPFTFNPWRWLDKNLESHNYFFIFGGGTRHCPGKELGIAEISTFLHYFVTKYRWEEVGGDKLLKFPRVEAPSGFHIRVSSY 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2423987 2426447 + Lsi03G001830.1 Lsi03g00183 657933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00183 462 Pfam Cytochrome P450 34 442 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g00183 462 PRINTS E-class P450 group I signature 369 393 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g00183 462 PRINTS E-class P450 group I signature 329 347 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g00183 462 PRINTS E-class P450 group I signature 402 412 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g00183 462 PRINTS E-class P450 group I signature 61 80 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g00183 462 PRINTS E-class P450 group I signature 263 280 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g00183 462 PRINTS E-class P450 group I signature 283 309 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g00183 462 PRINTS E-class P450 group I signature 412 435 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g00183 462 PRINTS P450 superfamily signature 274 291 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g00183 462 PRINTS P450 superfamily signature 412 423 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g00183 462 PRINTS P450 superfamily signature 330 341 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g00183 462 PRINTS P450 superfamily signature 403 412 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g00183 462 PANTHER CYTOCHROME P450 FAMILY PROTEIN 7 460 - -
Lsi03g00183 462 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 405 414 IPR017972 GO:0005506|GO:0016705
Lsi03g00183 462 PANTHER CYTOCHROME P450 26 7 460 - -
Lsi03g00183 462 Gene3D Cytochrome P450 24 459 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g00183 462 SUPERFAMILY Cytochrome P450 27 442 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00183 Lsi-Chr3:2423987 Lsi07g00205 Lsi-Chr7:2230672 1.74E-96 dispersed
Lsi03g00183 Lsi-Chr3:2423987 Lsi04g01563 Lsi-Chr4:23194296 4.27E-85 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00183 K09590 - csv:101206858 883.634