Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi03g00188 | ATGTATATAATTTCCGCATATTCTCATTCCTCCCAATTTCCGACTTACAGGTTTCTCTGTCCTCCACCCACCACCGAAGATCGTTATTCTCTTCGGTCTTCTCTTCTCCCTCCACTTTACTCTTCTCTTAAGGTGATGACATTAGCGTTCATCACAGTTGCTTTGAGGATAATCCCTTTGGATCCTCATGTCATTAACCTTACTGAACAGAGGCTGCTAATTTTACAGGAGTTTGGCACAATGGGTGCTGTCTGCTGCTGTTTGAGCGTGGAGGATTTTGAAGATTATGTTAATCCTAATAGTTCAGTATATAGGAATTGCACCTGTCTTAGTTGCTTCATTCAAAGCTTCTTAAATGCATACACATTGATTTTTCGAAGAGGAGAAGTGCATTCTGTCTCTTCATCAATTCAAGGGGCTTCATCTATGAATTCCACAGCATCAACAGATAACTCTTTATCTGAAATGTACCGCTCACCTCCAAGGCCATTGCCTTATGATGCTGACCCCAGATATATCCGCTTGCAGCGGGATGGATTAATTTCTAGGCGAGAGAAGGGGTCAAGCCATTTACATGAAGAGTCTGAACCTTTAAGAAGTGACGTGGATACAGATTCAGATTCTTTGGGCTCAGCAGGCAAATGGAACGGGTCTGCTTGTCTTGAGGAATCTAAAGAAAATCTCGGCAAATCATCTCTAAAGTTCCCTTCAACTAAGTCTACCACTGGACTTGGGTATTCTTATACATCCTCTGAAGACGAGGATGTCTGTCCAACGTGTCTTGAAGAATATACTTCGGAGAATCCCAAGATAGTGACAAAATGCTCTCATCATTTTCACCTTGGATGTATCTATGAGTGGATGGAGAGAAGTGATAACTGTCCAGTTTGTGGCAAGGTATGGTTCCTTTCATCCGTCATATCATGCAAACTTGTTCAATCACTATCTCAAAGCGACCCTATTGGTTGTGTTCTAGTGTCTGACTCAGATTGA | 993 | 41.99 | MYIISAYSHSSQFPTYRFLCPPPTTEDRYSLRSSLLPPLYSSLKVMTLAFITVALRIIPLDPHVINLTEQRLLILQEFGTMGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGASSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRSDVDTDSDSLGSAGKWNGSACLEESKENLGKSSLKFPSTKSTTGLGYSYTSSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVWFLSSVISCKLVQSLSQSDPIGCVLVSDSD | 330 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 2462808 | 2465675 | - | Lsi03G001880.1 | Lsi03g00188 | 657938 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi03g00188 | 330 | MobiDBLite | consensus disorder prediction | 183 | 209 | - | - | |
| Lsi03g00188 | 330 | SUPERFAMILY | RING/U-box | 251 | 304 | - | - | |
| Lsi03g00188 | 330 | MobiDBLite | consensus disorder prediction | 139 | 169 | - | - | |
| Lsi03g00188 | 330 | MobiDBLite | consensus disorder prediction | 139 | 156 | - | - | |
| Lsi03g00188 | 330 | Pfam | Ring finger domain | 256 | 297 | IPR001841 | - | |
| Lsi03g00188 | 330 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 235 | 302 | IPR013083 | - | |
| Lsi03g00188 | 330 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 81 | 302 | - | - | |
| Lsi03g00188 | 330 | ProSiteProfiles | Zinc finger RING-type profile. | 257 | 297 | IPR001841 | - | |
| Lsi03g00188 | 330 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 81 | 302 | - | - | |
| Lsi03g00188 | 330 | SMART | ring_2 | 257 | 297 | IPR001841 | - | |
| Lsi03g00188 | 330 | MobiDBLite | consensus disorder prediction | 183 | 203 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi03g00188 | Lsi-Chr3:2462808 | Lsi05g02050 | Lsi-Chr5:27452091 | 1.00E-22 | dispersed | |
| Lsi03g00188 | Lsi-Chr3:2462808 | Lsi09g00240 | Lsi-Chr9:2529297 | 6.61E-26 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi03g00188 | - | - | csv:101207736 | 439.113 |