Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00188 ATGTATATAATTTCCGCATATTCTCATTCCTCCCAATTTCCGACTTACAGGTTTCTCTGTCCTCCACCCACCACCGAAGATCGTTATTCTCTTCGGTCTTCTCTTCTCCCTCCACTTTACTCTTCTCTTAAGGTGATGACATTAGCGTTCATCACAGTTGCTTTGAGGATAATCCCTTTGGATCCTCATGTCATTAACCTTACTGAACAGAGGCTGCTAATTTTACAGGAGTTTGGCACAATGGGTGCTGTCTGCTGCTGTTTGAGCGTGGAGGATTTTGAAGATTATGTTAATCCTAATAGTTCAGTATATAGGAATTGCACCTGTCTTAGTTGCTTCATTCAAAGCTTCTTAAATGCATACACATTGATTTTTCGAAGAGGAGAAGTGCATTCTGTCTCTTCATCAATTCAAGGGGCTTCATCTATGAATTCCACAGCATCAACAGATAACTCTTTATCTGAAATGTACCGCTCACCTCCAAGGCCATTGCCTTATGATGCTGACCCCAGATATATCCGCTTGCAGCGGGATGGATTAATTTCTAGGCGAGAGAAGGGGTCAAGCCATTTACATGAAGAGTCTGAACCTTTAAGAAGTGACGTGGATACAGATTCAGATTCTTTGGGCTCAGCAGGCAAATGGAACGGGTCTGCTTGTCTTGAGGAATCTAAAGAAAATCTCGGCAAATCATCTCTAAAGTTCCCTTCAACTAAGTCTACCACTGGACTTGGGTATTCTTATACATCCTCTGAAGACGAGGATGTCTGTCCAACGTGTCTTGAAGAATATACTTCGGAGAATCCCAAGATAGTGACAAAATGCTCTCATCATTTTCACCTTGGATGTATCTATGAGTGGATGGAGAGAAGTGATAACTGTCCAGTTTGTGGCAAGGTATGGTTCCTTTCATCCGTCATATCATGCAAACTTGTTCAATCACTATCTCAAAGCGACCCTATTGGTTGTGTTCTAGTGTCTGACTCAGATTGA 993 41.99 MYIISAYSHSSQFPTYRFLCPPPTTEDRYSLRSSLLPPLYSSLKVMTLAFITVALRIIPLDPHVINLTEQRLLILQEFGTMGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGASSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRSDVDTDSDSLGSAGKWNGSACLEESKENLGKSSLKFPSTKSTTGLGYSYTSSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVWFLSSVISCKLVQSLSQSDPIGCVLVSDSD 330
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 2462808 2465675 - Lsi03G001880.1 Lsi03g00188 657938
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00188 330 MobiDBLite consensus disorder prediction 183 209 - -
Lsi03g00188 330 SUPERFAMILY RING/U-box 251 304 - -
Lsi03g00188 330 MobiDBLite consensus disorder prediction 139 169 - -
Lsi03g00188 330 MobiDBLite consensus disorder prediction 139 156 - -
Lsi03g00188 330 Pfam Ring finger domain 256 297 IPR001841 -
Lsi03g00188 330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 302 IPR013083 -
Lsi03g00188 330 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 81 302 - -
Lsi03g00188 330 ProSiteProfiles Zinc finger RING-type profile. 257 297 IPR001841 -
Lsi03g00188 330 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 81 302 - -
Lsi03g00188 330 SMART ring_2 257 297 IPR001841 -
Lsi03g00188 330 MobiDBLite consensus disorder prediction 183 203 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00188 Lsi-Chr3:2462808 Lsi05g02050 Lsi-Chr5:27452091 1.00E-22 dispersed
Lsi03g00188 Lsi-Chr3:2462808 Lsi09g00240 Lsi-Chr9:2529297 6.61E-26 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00188 - - csv:101207736 439.113