Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi03g00201 | ATGGGAATGAAGAGAATTGAGGCTACTGTTTCCTGTCTTGTGGCTTCTTTATTGTTTTGGGCTTCTGCAATAAATGGCTTGTTATCTCCCAAAGGTGTTAACTATGAAGTTCAAGCTTTGATGGGTATAAAAGCTTCTCTTCAAGATCCCCATGGTGTGCTTGAGAATTGGGATGGGGATTCTGTTGACCCATGTAGTTGGACTATGGTTACTTGCTCTCCTGAGAGCCTTGTCATTGGCCTAGGAACTCCAAGCCAGAACCTGTCTGGGACTCTTTCTTCAACCATTGGGAATTTGACAAACCTTCAAATTGTGCTGTTACAGAACAACAATATTACAGGCCCAATTCCTCCAGAGCTTGGGAGGCTCTCAAGGCTCCAAACACTTGATCTATCAAACAATTTCTTCACAGGGGAAATTCCTTCTCCTTTAGGCCATTTGAGAAGCCTACAGAGGCTTAACAACAACAGTCTTTCTGGGGTAATTCCAATGTCTTTAGCTAACATGACACAGCTTGCCTTTCTTGATGTGTCTTATAATAATATCAGTGGCCCTCTGCCCAGATTTCCCAGCAAAACATTCAACATTGTTGGAAACCCTCTGATTTGTGCAACCGGGTCCGAGGCCGGTTGCCACGGTACAACTCTAATGCCCATGTCCATGAATTTGAACAGTACACAAACTGGTTTACCTGCTGTGAAATTGAAGAGTCATAAAATGGCCCTTACATTTGGCTTGAGCCTAGCTTGCCTATGTCTGATTGTTCTTGTATTTGGACTGTTCATTTGGTGGAGAAGACGAAGCAATCAACCCACATTCTTCGATGTAAAAGATCGACAACATGAGGAAATTTCGCTTGGAAATCTGAGAAGATTCCAATTTAGAGAACTTCAGATAGCAACAAACAACTTCAGCAGCAAGAACATACTAGGAAAGGGAGGTTTTGGAAATGTTTACAAAGGAATTCTTTCAGATGGAACGGTTGTAGCTGTTAAAAGACTCAAAGATGGGAATGCAAGTAGAGGCGAGATCCAGTTTCAGACTGAAGTTGAGATGATCAGCCTAGCCGTGCACCGTCATCTCCTCAGATTATATGGATTTTGCAACACACCGACCGAAAGGCTTCTTGTTTACCCATATATGTCGAATGGGAGTGTTGCATCGCGGCTCAAAGGTAGCCATTTTAAGAGCATCAATGAAAATCCGTCTACACATTTGATACTTAACAGAAAACCGGTATTAGACTGGGGAACAAGGAAGAGAATTGCTATAGGAGCTGCAAGGGGATTGTTATACCTACATGAACAGTGTGACCCAAAGATAATACATAGAGATGTTAAAGCTGCAAACATATTGCTTGATGACTACTGCGAGGCTGTCGTTGGAGATTTCGGGTTAGCAAAGCTTCTGGATCATCAAGATTCACATGTCACAACTGCTGTGAGAGGCACTGTGGGACATATAGCTCCCGAGTATCTATCCACTGGACAGTCGTCCGAGAAAACAGATGTTTTCGGATTCGGAATCCTACTCCTTGAACTGATCACAGGGCAGAGAGCCCTTGAGTTTGGTAAAGCAGCTAATCAGAAAGGAGGCATTCTTGACTGGGTGAAGAAGATTCACCTGGAGAAGAAGCTGGAAGTGTTAGTGGACAAGGATCTGAAAGCCAACTATGACAGAGTTGAATTAGAGGAGATGGTTCAAGTGGCTTTGTTGTGCACACAGTACCTACCAGGACATAGACCAAAGATGTCAGAAGTTGTCAGAATGCTTGAAGGAGAAGGGCTTGCTGTGAGATGGGAAGCTTCTCAGAGAGTTGACTCAACAAAGTGCAAACCCCATGATTTCTCTTCCTCAGACAGATACTCTGATCTCACAGATGATTCATCATTGTTGGTTCAAGCCATGGAGCTCTCTGGTCCAAGGTGA | 1929 | 43.55 | MGMKRIEATVSCLVASLLFWASAINGLLSPKGVNYEVQALMGIKASLQDPHGVLENWDGDSVDPCSWTMVTCSPESLVIGLGTPSQNLSGTLSSTIGNLTNLQIVLLQNNNITGPIPPELGRLSRLQTLDLSNNFFTGEIPSPLGHLRSLQRLNNNSLSGVIPMSLANMTQLAFLDVSYNNISGPLPRFPSKTFNIVGNPLICATGSEAGCHGTTLMPMSMNLNSTQTGLPAVKLKSHKMALTFGLSLACLCLIVLVFGLFIWWRRRSNQPTFFDVKDRQHEEISLGNLRRFQFRELQIATNNFSSKNILGKGGFGNVYKGILSDGTVVAVKRLKDGNASRGEIQFQTEVEMISLAVHRHLLRLYGFCNTPTERLLVYPYMSNGSVASRLKGSHFKSINENPSTHLILNRKPVLDWGTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGGILDWVKKIHLEKKLEVLVDKDLKANYDRVELEEMVQVALLCTQYLPGHRPKMSEVVRMLEGEGLAVRWEASQRVDSTKCKPHDFSSSDRYSDLTDDSSLLVQAMELSGPR | 642 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 2629350 | 2633539 | - | Lsi03G002010.1 | Lsi03g00201 | 657951 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi03g00201 | 642 | SUPERFAMILY | Protein kinase-like (PK-like) | 288 | 618 | IPR011009 | - | |
Lsi03g00201 | 642 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 441 | 453 | IPR008271 | GO:0004672|GO:0006468 | |
Lsi03g00201 | 642 | SMART | serkin_6 | 304 | 591 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi03g00201 | 642 | ProSitePatterns | Protein kinases ATP-binding region signature. | 310 | 332 | IPR017441 | GO:0005524 | |
Lsi03g00201 | 642 | Gene3D | Ribonuclease Inhibitor | 33 | 213 | IPR032675 | - | |
Lsi03g00201 | 642 | Pfam | Leucine rich repeat N-terminal domain | 34 | 73 | IPR013210 | - | |
Lsi03g00201 | 642 | Gene3D | Phosphorylase Kinase; domain 1 | 273 | 380 | - | - | |
Lsi03g00201 | 642 | Pfam | Protein kinase domain | 305 | 589 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi03g00201 | 642 | ProSiteProfiles | Protein kinase domain profile. | 304 | 577 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi03g00201 | 642 | PANTHER | PROTEIN NSP-INTERACTING KINASE 1-LIKE ISOFORM X1 | 10 | 642 | - | - | |
Lsi03g00201 | 642 | PANTHER | SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 | 10 | 642 | - | - | |
Lsi03g00201 | 642 | Gene3D | Transferase(Phosphotransferase) domain 1 | 381 | 611 | - | - | |
Lsi03g00201 | 642 | SUPERFAMILY | L domain-like | 35 | 304 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi03g00201 | Lsi-Chr3:2629350 | Lsi04g00318 | Lsi-Chr4:3258592 | 0 | dispersed | |
Lsi07g00757 | Lsi-Chr7:8257843 | Lsi03g00201 | Lsi-Chr3:2629350 | 4.11E-82 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
83461 | PF00069 | Pkinase | 8.00E-42 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi03g00201 | - | - | csv:101209443 | 1187.17 |