Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00201 ATGGGAATGAAGAGAATTGAGGCTACTGTTTCCTGTCTTGTGGCTTCTTTATTGTTTTGGGCTTCTGCAATAAATGGCTTGTTATCTCCCAAAGGTGTTAACTATGAAGTTCAAGCTTTGATGGGTATAAAAGCTTCTCTTCAAGATCCCCATGGTGTGCTTGAGAATTGGGATGGGGATTCTGTTGACCCATGTAGTTGGACTATGGTTACTTGCTCTCCTGAGAGCCTTGTCATTGGCCTAGGAACTCCAAGCCAGAACCTGTCTGGGACTCTTTCTTCAACCATTGGGAATTTGACAAACCTTCAAATTGTGCTGTTACAGAACAACAATATTACAGGCCCAATTCCTCCAGAGCTTGGGAGGCTCTCAAGGCTCCAAACACTTGATCTATCAAACAATTTCTTCACAGGGGAAATTCCTTCTCCTTTAGGCCATTTGAGAAGCCTACAGAGGCTTAACAACAACAGTCTTTCTGGGGTAATTCCAATGTCTTTAGCTAACATGACACAGCTTGCCTTTCTTGATGTGTCTTATAATAATATCAGTGGCCCTCTGCCCAGATTTCCCAGCAAAACATTCAACATTGTTGGAAACCCTCTGATTTGTGCAACCGGGTCCGAGGCCGGTTGCCACGGTACAACTCTAATGCCCATGTCCATGAATTTGAACAGTACACAAACTGGTTTACCTGCTGTGAAATTGAAGAGTCATAAAATGGCCCTTACATTTGGCTTGAGCCTAGCTTGCCTATGTCTGATTGTTCTTGTATTTGGACTGTTCATTTGGTGGAGAAGACGAAGCAATCAACCCACATTCTTCGATGTAAAAGATCGACAACATGAGGAAATTTCGCTTGGAAATCTGAGAAGATTCCAATTTAGAGAACTTCAGATAGCAACAAACAACTTCAGCAGCAAGAACATACTAGGAAAGGGAGGTTTTGGAAATGTTTACAAAGGAATTCTTTCAGATGGAACGGTTGTAGCTGTTAAAAGACTCAAAGATGGGAATGCAAGTAGAGGCGAGATCCAGTTTCAGACTGAAGTTGAGATGATCAGCCTAGCCGTGCACCGTCATCTCCTCAGATTATATGGATTTTGCAACACACCGACCGAAAGGCTTCTTGTTTACCCATATATGTCGAATGGGAGTGTTGCATCGCGGCTCAAAGGTAGCCATTTTAAGAGCATCAATGAAAATCCGTCTACACATTTGATACTTAACAGAAAACCGGTATTAGACTGGGGAACAAGGAAGAGAATTGCTATAGGAGCTGCAAGGGGATTGTTATACCTACATGAACAGTGTGACCCAAAGATAATACATAGAGATGTTAAAGCTGCAAACATATTGCTTGATGACTACTGCGAGGCTGTCGTTGGAGATTTCGGGTTAGCAAAGCTTCTGGATCATCAAGATTCACATGTCACAACTGCTGTGAGAGGCACTGTGGGACATATAGCTCCCGAGTATCTATCCACTGGACAGTCGTCCGAGAAAACAGATGTTTTCGGATTCGGAATCCTACTCCTTGAACTGATCACAGGGCAGAGAGCCCTTGAGTTTGGTAAAGCAGCTAATCAGAAAGGAGGCATTCTTGACTGGGTGAAGAAGATTCACCTGGAGAAGAAGCTGGAAGTGTTAGTGGACAAGGATCTGAAAGCCAACTATGACAGAGTTGAATTAGAGGAGATGGTTCAAGTGGCTTTGTTGTGCACACAGTACCTACCAGGACATAGACCAAAGATGTCAGAAGTTGTCAGAATGCTTGAAGGAGAAGGGCTTGCTGTGAGATGGGAAGCTTCTCAGAGAGTTGACTCAACAAAGTGCAAACCCCATGATTTCTCTTCCTCAGACAGATACTCTGATCTCACAGATGATTCATCATTGTTGGTTCAAGCCATGGAGCTCTCTGGTCCAAGGTGA 1929 43.55 MGMKRIEATVSCLVASLLFWASAINGLLSPKGVNYEVQALMGIKASLQDPHGVLENWDGDSVDPCSWTMVTCSPESLVIGLGTPSQNLSGTLSSTIGNLTNLQIVLLQNNNITGPIPPELGRLSRLQTLDLSNNFFTGEIPSPLGHLRSLQRLNNNSLSGVIPMSLANMTQLAFLDVSYNNISGPLPRFPSKTFNIVGNPLICATGSEAGCHGTTLMPMSMNLNSTQTGLPAVKLKSHKMALTFGLSLACLCLIVLVFGLFIWWRRRSNQPTFFDVKDRQHEEISLGNLRRFQFRELQIATNNFSSKNILGKGGFGNVYKGILSDGTVVAVKRLKDGNASRGEIQFQTEVEMISLAVHRHLLRLYGFCNTPTERLLVYPYMSNGSVASRLKGSHFKSINENPSTHLILNRKPVLDWGTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGGILDWVKKIHLEKKLEVLVDKDLKANYDRVELEEMVQVALLCTQYLPGHRPKMSEVVRMLEGEGLAVRWEASQRVDSTKCKPHDFSSSDRYSDLTDDSSLLVQAMELSGPR 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2629350 2633539 - Lsi03G002010.1 Lsi03g00201 657951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00201 642 SUPERFAMILY Protein kinase-like (PK-like) 288 618 IPR011009 -
Lsi03g00201 642 ProSitePatterns Serine/Threonine protein kinases active-site signature. 441 453 IPR008271 GO:0004672|GO:0006468
Lsi03g00201 642 SMART serkin_6 304 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g00201 642 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524
Lsi03g00201 642 Gene3D Ribonuclease Inhibitor 33 213 IPR032675 -
Lsi03g00201 642 Pfam Leucine rich repeat N-terminal domain 34 73 IPR013210 -
Lsi03g00201 642 Gene3D Phosphorylase Kinase; domain 1 273 380 - -
Lsi03g00201 642 Pfam Protein kinase domain 305 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g00201 642 ProSiteProfiles Protein kinase domain profile. 304 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g00201 642 PANTHER PROTEIN NSP-INTERACTING KINASE 1-LIKE ISOFORM X1 10 642 - -
Lsi03g00201 642 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 10 642 - -
Lsi03g00201 642 Gene3D Transferase(Phosphotransferase) domain 1 381 611 - -
Lsi03g00201 642 SUPERFAMILY L domain-like 35 304 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00201 Lsi-Chr3:2629350 Lsi04g00318 Lsi-Chr4:3258592 0 dispersed
Lsi07g00757 Lsi-Chr7:8257843 Lsi03g00201 Lsi-Chr3:2629350 4.11E-82 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83461 PF00069 Pkinase 8.00E-42 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00201 - - csv:101209443 1187.17