Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00221 ATGGCTTCACCTTCTCCAAGTATTTCTCCTCCTGCGAATCCATCAGATTCCTCAGTTTCTTCACCACCTTCTCCTTCTCCTCCGGTGGAGTCTGCAACATCTCCCTCATCTCCCACATCTTCTGAGCCTAATCAGACTGGTGAACCTCCTTCATCACCTTCTAGTTCTTCAGCACCACCTCCTCAGTCACCACCAGCTGTTCCTGATGCTCCTCCTCCTTCTCCTCCATTGTCTCCTCCTCCATTGGCAGCATCATCACCTGCACCACCAGCATCCCCACCTCCTTCTCCCCCTGCTGGTTCCCCACCTCCACCTCCCCAAGCTTCGCCCTCACCGCCGCCACCTTCAACGCCATCCTCCCCACCACCACCACCACCACCACCACCACCACCTTCAACAACATCACCAACACCTTCCTCTGCATCACCACCTCCCCCAGAGAGATCAACTACCTCTCCTCCTCCTGAAGCTTCACCACCCCCTCCTGATTTATCACCTCCGCCCCCACCAGCAGCAGCAGGTGGTTCTCCACCTCCTCCATCCAATCCTAGACCTCCATCTTCAACTCCCTCTCCCCCTCCCCCTGATACAATTTCACCTTCTCCACCTCCACCAACTAATGTCCCAACACCACCTTCATCAGCAGGAGAATCACCTAAAGTATCTCCCCCATCCCACAAGGCTTCTCCTCCTTCAGATTCTCAATCTCCACCTTCAGATAACTCCCCTCCACCAAGATCTGCAGTACCATCACCTCCTTCTTCTGTTCCTTCATCGTCTGCTCCTCCTCCAATTAGTGATCCTGGTTCTCCAACTAATTCATCTGGTGGAACTCCTGTTACCCCTCCAACTTCTGTTACACCAGAACGACCAATTGCAACAACCAATGGTACCAATATTACAGCAAATAACTCAACCAATAAAGGGGGTTTCAGCACTGGAACATCTGTGGCAGTTGGCAGTGTGGTTGGTGTTCTAGTGCTGAGTCTTGTTATCATGGCTATGTGGTTTGTTCAGAAACGGAAGAGAAGAAAGAAGAATATCCCTTACACCATGGCTTCTCCTTTTTCCTCCCAAAACTCAGATTCCCTTTTCCTAAGGCCCCATTCTTCAGCTCCCGTAGTAGGAAGCCGTACTGATAGTGATTTCAAGTATTCATCATCTGAAGGAGGTGGAGTAGTTAATTCCAGATCGTTTGCTTATGATGACCTACACCAGGCAACAAGTGGGTTTTCATCGAATAATCTTTTGGGGGAAGGTGGATTTGGTTGTGTGTACAAAGGCACCCTTGCAGATGGAAGAGACGTAGCTGTTAAACAACTTAAAGTGGGTGGTGGACAGGGAGAACGAGAGTTCAGAGCCGAAGTTGAGATTATTAGCCGAGTACACCATCGGCATTTGGTTTCCCTGGTTGGTTACTGTATCTCTGATTATCAAAGATTGCTTGTCTACGATTATGTTCCAAACAATACCCTTCATTACCATCTGCACGGGGAGAGCAGGCCAGTTTTGGCTTGGGCTACACGTGTTCGAATTGCTGCTGGTGCAGCTCGTGGAATTGCTTACCTACATGAGGATTGTCATCCACGCATTATTCACAGGGATATTAAATCGTCTAACATTCTGCTTGATATCAACTTTGAAGCTCAGGTCGCAGATTTTGGGCTTGCTAAATTGGCACTGGATTCGCATACTCATGTAACGACTCGTGTTATGGGAACCTTTGGATACATGGCTCCAGAGTACGCGACGAGTGGGAAATTGACAGATAAATCTGATGTTTTCTCTTTTGGGGTTGTACTTTTGGAGTTAATTACTGGTCGCAAGCCTGTGGATTCTTCTCAGCCTCTAGGGGATGAGAGCTTAGTTGAATGGGCTCGACCATTGCTTGCACAAGCCATTGAGGATGAGAATTTTGAAGAATTGGTGGATCCAAGGCTAGACAACAATTATGTAGACAGAGAAATGTTCCGGATGATTGAAGCAGCTGCCGCTTGTGTTCGTCATTCGGCAGTAAAGAGGCCAAGAATGAGTCAAGTGGTGAGAGCTCTAGATTCTTTAGATGAAATGTCAGATCTTGCAAATGGGGTGAAACCTGGGCAGAGTGGAGTGTTTGATTCAGCTGAACAATCTGCTCAGATTAGAATGTTTCAGAGAATGGCTTTTGGCAGTCAAGATTACAGTTACGGTTATTCCGATCGAGATCGAAGTCGAAGTTATAGTCAAAGTCAAAGTAGCTGGAGTAGAGGATCCAGAGATCAAAGTCCCTCGGCGCCTATGAATCGATCCCGGCAATGA 2298 48.13 MASPSPSISPPANPSDSSVSSPPSPSPPVESATSPSSPTSSEPNQTGEPPSSPSSSSAPPPQSPPAVPDAPPPSPPLSPPPLAASSPAPPASPPPSPPAGSPPPPPQASPSPPPPSTPSSPPPPPPPPPPPSTTSPTPSSASPPPPERSTTSPPPEASPPPPDLSPPPPPAAAGGSPPPPSNPRPPSSTPSPPPPDTISPSPPPPTNVPTPPSSAGESPKVSPPSHKASPPSDSQSPPSDNSPPPRSAVPSPPSSVPSSSAPPPISDPGSPTNSSGGTPVTPPTSVTPERPIATTNGTNITANNSTNKGGFSTGTSVAVGSVVGVLVLSLVIMAMWFVQKRKRRKKNIPYTMASPFSSQNSDSLFLRPHSSAPVVGSRTDSDFKYSSSEGGGVVNSRSFAYDDLHQATSGFSSNNLLGEGGFGCVYKGTLADGRDVAVKQLKVGGGQGEREFRAEVEIISRVHHRHLVSLVGYCISDYQRLLVYDYVPNNTLHYHLHGESRPVLAWATRVRIAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDINFEAQVADFGLAKLALDSHTHVTTRVMGTFGYMAPEYATSGKLTDKSDVFSFGVVLLELITGRKPVDSSQPLGDESLVEWARPLLAQAIEDENFEELVDPRLDNNYVDREMFRMIEAAAACVRHSAVKRPRMSQVVRALDSLDEMSDLANGVKPGQSGVFDSAEQSAQIRMFQRMAFGSQDYSYGYSDRDRSRSYSQSQSSWSRGSRDQSPSAPMNRSRQ 765
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2790686 2797132 + Lsi03G002210.1 Lsi03g00221 657971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00221 765 Gene3D Transferase(Phosphotransferase) domain 1 487 699 - -
Lsi03g00221 765 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK8 111 738 - -
Lsi03g00221 765 MobiDBLite consensus disorder prediction 1 308 - -
Lsi03g00221 765 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 111 738 - -
Lsi03g00221 765 Gene3D Phosphorylase Kinase; domain 1 380 486 - -
Lsi03g00221 765 MobiDBLite consensus disorder prediction 1 32 - -
Lsi03g00221 765 CDD STKc_IRAK 417 687 - -
Lsi03g00221 765 MobiDBLite consensus disorder prediction 33 52 - -
Lsi03g00221 765 ProSitePatterns Serine/Threonine protein kinases active-site signature. 531 543 IPR008271 GO:0004672|GO:0006468
Lsi03g00221 765 MobiDBLite consensus disorder prediction 734 765 - -
Lsi03g00221 765 ProSiteProfiles Protein kinase domain profile. 411 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g00221 765 Pfam Protein tyrosine and serine/threonine kinase 414 684 IPR001245 GO:0004672|GO:0006468
Lsi03g00221 765 MobiDBLite consensus disorder prediction 236 269 - -
Lsi03g00221 765 ProSitePatterns Protein kinases ATP-binding region signature. 417 439 IPR017441 GO:0005524
Lsi03g00221 765 SUPERFAMILY Protein kinase-like (PK-like) 393 684 IPR011009 -
Lsi03g00221 765 SMART serkin_6 411 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g00221 765 MobiDBLite consensus disorder prediction 53 218 - -
Lsi03g00221 765 MobiDBLite consensus disorder prediction 270 308 - -
Lsi03g00221 765 MobiDBLite consensus disorder prediction 728 765 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00221 Lsi-Chr3:2790686 Lsi04g00550 Lsi-Chr4:5048319 6.85E-174 dispersed
Lsi04g00311 Lsi-Chr4:3137175 Lsi03g00221 Lsi-Chr3:2790686 1.14E-167 dispersed
Lsi10g00357 Lsi-Chr10:5574081 Lsi03g00221 Lsi-Chr3:2790686 1.68E-66 dispersed
Lsi03g00221 Lsi-Chr3:2790686 Lsi11g00260 Lsi-Chr11:2621815 1.96E-164 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83462 PF07714 PK_Tyr_Ser-Thr 1.80E-45 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00221 - - csv:101211665 864.374