Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi03g00225 | ATGGCGGTTCCCGTGGTCCAGTTCCCGATCTTCATGGCTGTCAGAGTCCTTGGGATGCTTGTGGCAGCTCTTCTGTTCATTTGGACCTTGCACTTCCGTGGAGGATTGGCACTTATCTCAGAAAACAAGGATCACATCTTCAATGTCCATCCTGTTCTTATGGTGATTGGACTTATTCTTCTAAACGGTGAAGCAATGTTAGCATACAAGACAGTATCAGGAACCAAAAACTTCAGAAAACTAGTTCATCTTGCACTCCAATTTGTTGCATTCTTCTTAAGCCTGATTGGCATATGGGCTGCCCTGAAGTTCCACAATGACAAAGGAATCGAAAACTTTTACAGTCTACATTCATGGTTGGGCTTAGTTTCTATCTTTCTGTTTGGCATCCAGTGGTCTGCAGGTTTTGTAACCTTTTGGTACCCAGGTGGCTCTAGAAACAGCAGAGCTACTCTGTTGCCATGGCATGTATTCTTTGGCGTTTACATATATGGCCTTTCCATTGCTACAACTGTTACTGGATTGTTAGAAAAAGCTACATTTCTTCAAACCAGCAAGGTAATATTACGCTATTCGAATGAGGCTTTGCTGATAAATTCATTGGGTGTCCTCATTGTTCTCTTGGGTGGTCTCGTAATTCTGGCGGTTATCGCTCTGCCGAATGCCAAAGGTGATGTTAACAGAGGGCTAGCAGAATAG | 699 | 43.49 | MAVPVVQFPIFMAVRVLGMLVAALLFIWTLHFRGGLALISENKDHIFNVHPVLMVIGLILLNGEAMLAYKTVSGTKNFRKLVHLALQFVAFFLSLIGIWAALKFHNDKGIENFYSLHSWLGLVSIFLFGIQWSAGFVTFWYPGGSRNSRATLLPWHVFFGVYIYGLSIATTVTGLLEKATFLQTSKVILRYSNEALLINSLGVLIVLLGGLVILAVIALPNAKGDVNRGLAE | 232 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 2843153 | 2846090 | + | Lsi03G002250.1 | Lsi03g00225 | 657975 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi03g00225 | 232 | CDD | Cyt_b561_ACYB-1_like | 40 | 183 | - | - | |
| Lsi03g00225 | 232 | SMART | 561_7 | 49 | 175 | IPR006593 | - | |
| Lsi03g00225 | 232 | Gene3D | - | 1 | 228 | - | - | |
| Lsi03g00225 | 232 | ProSiteProfiles | Cytochrome b561 domain profile. | 13 | 217 | IPR006593 | - | |
| Lsi03g00225 | 232 | PANTHER | CYTOCHROME B561-RELATED | 1 | 229 | IPR043205 | GO:0016491 | |
| Lsi03g00225 | 232 | Pfam | Eukaryotic cytochrome b561 | 49 | 181 | IPR006593 | - | |
| Lsi03g00225 | 232 | PANTHER | B561, PUTATIVE-RELATED | 1 | 229 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi03g00225 | Lsi-Chr3:2843153 | Lsi05g00005 | Lsi-Chr5:72543 | 6.11E-70 | dispersed | |
| Lsi03g00225 | Lsi-Chr3:2843153 | Lsi04g00298 | Lsi-Chr4:2998833 | 2.33E-53 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi03g00225 | K08360 | - | csv:101212633 | 410.609 |