Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00243 ATGTGCATACGCATCAAGAAGAAGATGGCAAAGCAAGGTATTCATGGCCCTAAACCCCGCCCTCTACTCGGCAACATCCTCGACGTCGCCGCCCTCCTCTCCAAATCCACCTCCTCCGACATGCCCTCCATCTCTCACGACCTCGTCCCCCGGAAGAGATTTATATTTTGGAATGGGATTGAGCCTCGAATGTGTCTGACAGAAACGGAATTGATAAAAGAGCTATTGTCAAAATACAGTGCGGTTTCGGGCAAGTCATGGCTCCAACAACAAGGCTCTAAGCACTTTATTGGTCGAGGTCTTTTAATGGCCAACGGTCCAAATTGGCTCCATCAACGCCATATTGTCGCGCCGGCTTTCGTCGGGGACCGACTTAAGAGTTACGCGGGGTATATGGTGGAGTGCACAAGAGAGATGCTTGAATCAATTGAAAATGAGGTAAAATCGGGGCGATCAGAGTTTGAAATCGGCGAGTATATGACCACACTCACTGCTGATATCATTTCCAGAACCGAGTTTGAAAGCAGCTACGAAAAGGGAAAACAAATCTTTCATTTACTTACTGTTTTACAGCATCTCTGTGCCCAGGCCAGCCGCCACCTCTGTCTTCCCGGTAGCCGGTTTTTTCCAAGTAAATATAACAGAGAGATAAAGGCATTGAAAGGGAAAGTGGAGGAATTGTTAATGGAGATAATACAGAGCAGAAGGGATTGTGTGGAAATTGGGAGAAGCAGTTCATATGGAAATGATTTATTGGGAATGTTGCTAAATGAAATGCAAAAGAAAAAAGATGGGAATGGTTTGAGTTTGAATTTGCAAATTATAATGGATGAATGCAAAACCTTTTTCTTTGCTGGCCATGAAACCACTGCCCTTTTGCTCACTTGGACTGTCATGTTATTAGCTACTAACCCTTCTTGGCAACACAAGGTTCGAGCTGAAGTTATCGACGTTTGCGGTTCTCAAACGCCCTCGTTTCATCATCTTTCCAAACTCTCCCAGTTGAGTATGGTGATAAATGAATCACTAAGACTATACCCACCAGCAAGTATTCTTCCAAGGATGGCATTTGAAGATATAAAACTTGGAGATTTAGAGATCCCAAAAGGCTTATCAATATGGATTCCAGTGTTAGCCATTCATCATAGTGAAGAATTATGGGGAAAAGATGCAAATGAGTTCAATCCTGAAAGATTTGCCAAATCAAAAGCTTTTACTTCGGGTGGATTCATCCCTTTTGCCTCTGGCCCTCGCAACTGTGTTGGCCAATCTTTTGCTCTTATGGAAACCAAAATCATCTTGGCTATGCTAATCTCCAAATTTAGCTTCACCATCTCCGATAATTATCGACATGCACCCGTCGTCGTGCTCACTATAAAACCTAAATACGGCGTTCAAGTTTGCTTGAAGCCTTTGAATTAA 1422 43.39 MCIRIKKKMAKQGIHGPKPRPLLGNILDVAALLSKSTSSDMPSISHDLVPRKRFIFWNGIEPRMCLTETELIKELLSKYSAVSGKSWLQQQGSKHFIGRGLLMANGPNWLHQRHIVAPAFVGDRLKSYAGYMVECTREMLESIENEVKSGRSEFEIGEYMTTLTADIISRTEFESSYEKGKQIFHLLTVLQHLCAQASRHLCLPGSRFFPSKYNREIKALKGKVEELLMEIIQSRRDCVEIGRSSSYGNDLLGMLLNEMQKKKDGNGLSLNLQIIMDECKTFFFAGHETTALLLTWTVMLLATNPSWQHKVRAEVIDVCGSQTPSFHHLSKLSQLSMVINESLRLYPPASILPRMAFEDIKLGDLEIPKGLSIWIPVLAIHHSEELWGKDANEFNPERFAKSKAFTSGGFIPFASGPRNCVGQSFALMETKIILAMLISKFSFTISDNYRHAPVVVLTIKPKYGVQVCLKPLN 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3057964 3061408 + Lsi03G002430.1 Lsi03g00243 657993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00243 473 PRINTS E-class P450 group I signature 274 291 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g00243 473 PRINTS E-class P450 group I signature 420 443 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g00243 473 PRINTS E-class P450 group I signature 377 401 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g00243 473 PRINTS E-class P450 group I signature 163 181 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g00243 473 PRINTS E-class P450 group I signature 294 320 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g00243 473 PRINTS E-class P450 group I signature 410 420 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g00243 473 Pfam Cytochrome P450 15 447 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g00243 473 Gene3D Cytochrome P450 2 473 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g00243 473 PANTHER CYTOCHROME P450 FAMILY PROTEIN 3 468 - -
Lsi03g00243 473 SUPERFAMILY Cytochrome P450 16 471 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g00243 473 PRINTS P450 superfamily signature 285 302 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g00243 473 PRINTS P450 superfamily signature 337 348 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g00243 473 PRINTS P450 superfamily signature 411 420 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g00243 473 PRINTS P450 superfamily signature 420 431 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g00243 473 Coils Coil 217 237 - -
Lsi03g00243 473 PANTHER CYTOCHROME P450 FAMILY MEMBER 3 468 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00243 Lsi-Chr3:3057964 Lsi11g00296 Lsi-Chr11:3063954 5.93E-110 dispersed
Lsi05g00383 Lsi-Chr5:4853695 Lsi03g00243 Lsi-Chr3:3057964 0 transposed
Lsi07g00790 Lsi-Chr7:8703121 Lsi03g00243 Lsi-Chr3:3057964 3.55E-39 transposed
Lsi03g00243 Lsi-Chr3:3057964 Lsi04g01001 Lsi-Chr4:11167636 5.27E-75 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00243 K10717 - csv:101215037 890.952