Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi03g00254 | ATGGCGGTCGCTTTCCATGATGTCAAGTCGGCAGCCGGTTTGAAAAAACTCGATGAATACTTGCTTAGTCGTAGCTACATTTCCGGGTATCAACCTTCAAAGGATGACGTTACAGTTTACGAAGCGCTCTCCAAACCGGTATCCAGTGAATATGTTAACGTGTCTAGGTGGTGTAATCACATCGAAGCACTCTTGAGAGTTTCCGCTGTTTTTGGGGAGGGTTCGGGTGTTAAGTTCGATGCAATTGCAACCCCACCTGCTGCAGATGCAAAGGTGAAAACTTTACCTAGTGTTTCCTTTATATGTTATTTGGTGTACACCAAATTTCATCAGGGTGCCGATGACGACGACGACGATGACATGGACCTATTTGGTGAAGAGACCGAAGAGGAAAAGAAGGCTGCTGAAGAGCGTGCAGCTTCCATTAAGGCTTCTGCAAAGAAGAAAGAGAGTGGCAAATCATCAGTTCTGATGGATATCAAACCTTGGGATGACGAAACTGACATGAAGAAACTTGAAGAGGCTGTAAGAAGCGTTCAGATGGAAGGCTTACTTTGGGGAGCATCGAAACTCGTCCCTGTTGGATATGGTATTAAGAAATTGCAGATAATGCTCACAATTGTTGATGACCTTGTGTCTGTTGACAATCTCATTGAGGAATATCTGACAGTTGAACCCATAAACGAGCATGTCCAGAGCTGTGACATCGTGGCTTTCAACAAAATATGTAAGTTCCATTTTTATTTTGTTGCACTTGCACATAGCTATTTGAATTTTACAATTTTGAGCTTTTTGTCAGAACCAAAGATCGGTGTTTCTAAGATGTTGCTGGATCTGGGGAAGATCTTTAATTGCGGTGTTGATCTAGTGGTAAGGTCGATTTCGTATCTTCAACCGTTGACTTGGGTATCTTCTGCAAAATTTATCCTAATTTTTTAA | 939 | 42.17 | MAVAFHDVKSAAGLKKLDEYLLSRSYISGYQPSKDDVTVYEALSKPVSSEYVNVSRWCNHIEALLRVSAVFGEGSGVKFDAIATPPAADAKVKTLPSVSFICYLVYTKFHQGADDDDDDDMDLFGEETEEEKKAAEERAASIKASAKKKESGKSSVLMDIKPWDDETDMKKLEEAVRSVQMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEYLTVEPINEHVQSCDIVAFNKICKFHFYFVALAHSYLNFTILSFLSEPKIGVSKMLLDLGKIFNCGVDLVVRSISYLQPLTWVSSAKFILIF | 312 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 3184497 | 3189880 | + | Lsi03G002540.1 | Lsi03g00254 | 658004 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi03g00254 | 312 | MobiDBLite | consensus disorder prediction | 117 | 136 | - | - | |
Lsi03g00254 | 312 | Pfam | EF-1 guanine nucleotide exchange domain | 155 | 242 | IPR014038 | GO:0003746|GO:0006414 | |
Lsi03g00254 | 312 | ProSitePatterns | Elongation factor 1 beta/beta'/delta chain signature 1. | 117 | 125 | IPR001326 | GO:0003746|GO:0005853|GO:0006414 | |
Lsi03g00254 | 312 | SUPERFAMILY | eEF-1beta-like | 150 | 242 | IPR036219 | - | |
Lsi03g00254 | 312 | SMART | EF1_GNE_2 | 153 | 242 | IPR014038 | GO:0003746|GO:0006414 | |
Lsi03g00254 | 312 | Gene3D | - | 146 | 242 | IPR014717 | - | |
Lsi03g00254 | 312 | ProSitePatterns | Elongation factor 1 beta/beta'/delta chain signature 2. | 231 | 242 | IPR001326 | GO:0003746|GO:0005853|GO:0006414 | |
Lsi03g00254 | 312 | PANTHER | ELONGATION FACTOR 1-DELTA 1-RELATED | 1 | 245 | - | - | |
Lsi03g00254 | 312 | Gene3D | - | 3 | 75 | - | - | |
Lsi03g00254 | 312 | SUPERFAMILY | GST C-terminal domain-like | 9 | 69 | IPR036282 | - | |
Lsi03g00254 | 312 | CDD | EF1B | 151 | 242 | IPR014038 | GO:0003746|GO:0006414 | |
Lsi03g00254 | 312 | PANTHER | EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER | 1 | 245 | - | - | |
Lsi03g00254 | 312 | Coils | Coil | 125 | 145 | - | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi03g00254 | K03232 | - | csv:101215827 | 360.533 |