Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00254 ATGGCGGTCGCTTTCCATGATGTCAAGTCGGCAGCCGGTTTGAAAAAACTCGATGAATACTTGCTTAGTCGTAGCTACATTTCCGGGTATCAACCTTCAAAGGATGACGTTACAGTTTACGAAGCGCTCTCCAAACCGGTATCCAGTGAATATGTTAACGTGTCTAGGTGGTGTAATCACATCGAAGCACTCTTGAGAGTTTCCGCTGTTTTTGGGGAGGGTTCGGGTGTTAAGTTCGATGCAATTGCAACCCCACCTGCTGCAGATGCAAAGGTGAAAACTTTACCTAGTGTTTCCTTTATATGTTATTTGGTGTACACCAAATTTCATCAGGGTGCCGATGACGACGACGACGATGACATGGACCTATTTGGTGAAGAGACCGAAGAGGAAAAGAAGGCTGCTGAAGAGCGTGCAGCTTCCATTAAGGCTTCTGCAAAGAAGAAAGAGAGTGGCAAATCATCAGTTCTGATGGATATCAAACCTTGGGATGACGAAACTGACATGAAGAAACTTGAAGAGGCTGTAAGAAGCGTTCAGATGGAAGGCTTACTTTGGGGAGCATCGAAACTCGTCCCTGTTGGATATGGTATTAAGAAATTGCAGATAATGCTCACAATTGTTGATGACCTTGTGTCTGTTGACAATCTCATTGAGGAATATCTGACAGTTGAACCCATAAACGAGCATGTCCAGAGCTGTGACATCGTGGCTTTCAACAAAATATGTAAGTTCCATTTTTATTTTGTTGCACTTGCACATAGCTATTTGAATTTTACAATTTTGAGCTTTTTGTCAGAACCAAAGATCGGTGTTTCTAAGATGTTGCTGGATCTGGGGAAGATCTTTAATTGCGGTGTTGATCTAGTGGTAAGGTCGATTTCGTATCTTCAACCGTTGACTTGGGTATCTTCTGCAAAATTTATCCTAATTTTTTAA 939 42.17 MAVAFHDVKSAAGLKKLDEYLLSRSYISGYQPSKDDVTVYEALSKPVSSEYVNVSRWCNHIEALLRVSAVFGEGSGVKFDAIATPPAADAKVKTLPSVSFICYLVYTKFHQGADDDDDDDMDLFGEETEEEKKAAEERAASIKASAKKKESGKSSVLMDIKPWDDETDMKKLEEAVRSVQMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEYLTVEPINEHVQSCDIVAFNKICKFHFYFVALAHSYLNFTILSFLSEPKIGVSKMLLDLGKIFNCGVDLVVRSISYLQPLTWVSSAKFILIF 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3184497 3189880 + Lsi03G002540.1 Lsi03g00254 658004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00254 312 MobiDBLite consensus disorder prediction 117 136 - -
Lsi03g00254 312 Pfam EF-1 guanine nucleotide exchange domain 155 242 IPR014038 GO:0003746|GO:0006414
Lsi03g00254 312 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 117 125 IPR001326 GO:0003746|GO:0005853|GO:0006414
Lsi03g00254 312 SUPERFAMILY eEF-1beta-like 150 242 IPR036219 -
Lsi03g00254 312 SMART EF1_GNE_2 153 242 IPR014038 GO:0003746|GO:0006414
Lsi03g00254 312 Gene3D - 146 242 IPR014717 -
Lsi03g00254 312 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 231 242 IPR001326 GO:0003746|GO:0005853|GO:0006414
Lsi03g00254 312 PANTHER ELONGATION FACTOR 1-DELTA 1-RELATED 1 245 - -
Lsi03g00254 312 Gene3D - 3 75 - -
Lsi03g00254 312 SUPERFAMILY GST C-terminal domain-like 9 69 IPR036282 -
Lsi03g00254 312 CDD EF1B 151 242 IPR014038 GO:0003746|GO:0006414
Lsi03g00254 312 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 1 245 - -
Lsi03g00254 312 Coils Coil 125 145 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00254 K03232 - csv:101215827 360.533