Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00261 ATGAAAAGGCTATTGGGGTTGTTCGTCTTGTTCGTTGTGGCTCCAATGTTGGTGAGATCTCTGAACCCACCTCTGAACGACGACGTTTTGGGGCTGATTGTGTTCAAGGCCGACATTGAAGATCCTAAAGGGAAACTCGCTTCGTGGAATGAAGATGACGATAACCCCTGTAATTGGGTTGGTGTAAAATGCAACCCCAGATCCAATAGAGTTGTTGAGCTCAATCTTGATGGCTTCTCTCTCAATGGCAGGCTTGGTCGCGGTCTTCTTCAGTTGCAGTTTCTTCGTAAACTCTCTCTTGCGAACAACAATCTTACTGGAAATTTAAGTCCCAATAATGCTCGCTTTGAAAATCTTCGAGTGGTCGATTTAAGCGGCAATGGTTTTCATGGGATGATTCCGGATGATTTCTTCCGGCAATGTGGGTCGTTGAGAGTAATCTCTTTGGCTAAGAACAAATTTTCAGGGAAAATCCCGGAAAGTTTGGGCTCTTGTTCCAGTCTTGCTGCTGTTAATTTATCTTCTAATCAGTTTTCAGGTTCATTGCCTTCTGGGATTTGGTCCTTGATTGGACTTCGATCTTTGGATTTGTCTGATAATATGTTGGAAGGTGAAATTCCACAGGAGGTGAAGGATATGAATAATTTGCGAGCAATTAATTTGGGCAAGAATCGGTTTTCTGGTCAGATCCCAGATGGGATTGGGAGTTGTTTGCTCTTGAGGTCTGTTGATCTCAGTGAGAATTCTTTCTCCGGCGACATTCCGGCGACAATGCAGAAGCTTAGTTTATGCAGTACTCTTAATTTAAGAAGAAACTCATTTGAAGGAAAGGTTCCTGAATGGATTGGTGGAATGGAAGGCCTTGAAATCTTGGACCTTTCTGGGAATAGATTTTCTGGTCCAGTTCCAAGTTCATTTGGGAATCTTCAAAAACTGAAGGTTTTGAATTTTTCTGAAAATGGTTTAACTGGTAGCTTGGCTGAGTCCATAGTTCCTTCTCAAAACCTTTCAGCCATGGATCTCAGTCACGGTTCTCTCACTGGTGTTCTTCCGGCCTGGATTCTGAAGCTGGGTTCGCAAAATGTATTGCCTTCTGATATCAAAAGCAGCTCTCTTTCGACAACTGTGGGAAAAGCTCTTGTTAATCTTCAAGTTTTAGATTTGTCTCACAATGCACTTTCTGGTGAAATATCACCTGATATTGGGATATTAAGTAACTTGCAGGTGTTAAACCTGTGTAAGAACTCATTTGTTGGGGCTATTCCAGAGAGTATTGGAGGCCTGAAGGCCTTGGTTTTTCTTGACTTGAGTGAGAACCAGTTGAATGGAAGCATTCCCAAAACATTAGGCGGAGACGTATCGTTGAAAGAATTGAGACTGGAGAAGAACTTGCTGGAGGGTGAAGTTCCAAATTCAATTGGGAACTGTTCTTCACTTGTAACTTTGGACGTATCGGAAAACAGAATAACTGGCTCCATACCAGCAGAGTTGTCTCAACTTATCAATCTTCAAATCGTGGACTTGTCAACAAACAATCTCAGGGGTGCACTGCCAAAACAGTTGGCCAATCTTCCCAACCTTCTTTTGTTTAACATTTCTCACAACAATCTGCAAGGTGAACTGCCTGCAGGTGGCTTTTTCAATACAATCTCCCCTTCCTCTGTGGCTGGAAATCCTTCCATTTGTGGTTCTATTGTCAAGAAGTCTTGCCCTGGTGTCCTTCCAAAGCCTATTGTCCTCAACCCCAACTCATCTTCTGACCCTGGTTCTCCTTCATTACCTTCAACTCTTGGTCACAAAAGAATCATCCTCAGCATCTCTGCACTCATTGCCATTGGTGCAGCTGCTGTTATCCTCGTCGGTGTAGTTGCGATCACCGTCATTAACCTCCATGTTCGGTCATCTGCAAATCATCCTGAAGCAGCCATCACGTTTTCTGGAGGGGATGACTTCAGCCACTCCCCAACTACGGATGCCAATTCTGGCAAACTGGTCATGTTCTCGGGAGATCCCGACTTCAGTACCGGTGCACATGCCCTCCTTAACAAGGACTGCGAGCTTGGCCGTGGGGGATTTGGAGCGGTTTACCAGACTGTTCTTCGTGATGGGCATCCGGTTGCAATAAAAAAGCTCACTGTTTCAAGTCTTGTCAAATCTCAAGAAGAGTTTGAAAGGGAGGTTAAGAAGTTGGGGAAAGTTAGGCACCAAAATCTAGTGGCTCTAGAAGGTTATTACTGGACTCCATCTCTACAGCTCCTCATATATGAATTTGTTTCTGGAGGGAGTTTGTATAAACAGCTTCATGAAGGATTGGGTGGAAACACCATCTCATGGAATGAAAGGTTCAACATAATCCTCGGAACCGCAAAAAGCTTGGCACATTTGCACCAAATGAACATCATCCACTACAATATAAAATCAAGCAATGTCCTGATTGATAGTTCTGGAGAACCTAAAGTTGGAGATTTTGGCCTAGCAAGATTGTTACCAATGCTTGATCGGTACGTGTTGAGCAGCAAGATACAGAGCGCACTCGGGTACATGGCACCCGAGTTTGCCTGCAAAACAGTTAAGATAACAGAGAAATGTGATGTGTATGGATTTGGGGTTCTGGTTCTTGAGGTGGTGACTGGGAAGAGACCTGTAGAGTACATGGAAGACGACGTAGTGGTACTCTGCGACATGGTTCGACGGGCGCTGGAAGAAGGTCGGGTGGAGGAATGCATTGATGGGAGGCTCCAGAGGAATTTTCCATCAGAGGAGGCCATACCAGTAGTGAAACTAGGCTTGATATGCACTTCTCAGGTGCCATCAAACCGACCTGATATGGCAGAGGTTGTTAATATATTAGAGCTTATCAGATGTCCATCAGAAGGCCAAGAAGAATTGGGATAA 2895 44.28 MKRLLGLFVLFVVAPMLVRSLNPPLNDDVLGLIVFKADIEDPKGKLASWNEDDDNPCNWVGVKCNPRSNRVVELNLDGFSLNGRLGRGLLQLQFLRKLSLANNNLTGNLSPNNARFENLRVVDLSGNGFHGMIPDDFFRQCGSLRVISLAKNKFSGKIPESLGSCSSLAAVNLSSNQFSGSLPSGIWSLIGLRSLDLSDNMLEGEIPQEVKDMNNLRAINLGKNRFSGQIPDGIGSCLLLRSVDLSENSFSGDIPATMQKLSLCSTLNLRRNSFEGKVPEWIGGMEGLEILDLSGNRFSGPVPSSFGNLQKLKVLNFSENGLTGSLAESIVPSQNLSAMDLSHGSLTGVLPAWILKLGSQNVLPSDIKSSSLSTTVGKALVNLQVLDLSHNALSGEISPDIGILSNLQVLNLCKNSFVGAIPESIGGLKALVFLDLSENQLNGSIPKTLGGDVSLKELRLEKNLLEGEVPNSIGNCSSLVTLDVSENRITGSIPAELSQLINLQIVDLSTNNLRGALPKQLANLPNLLLFNISHNNLQGELPAGGFFNTISPSSVAGNPSICGSIVKKSCPGVLPKPIVLNPNSSSDPGSPSLPSTLGHKRIILSISALIAIGAAAVILVGVVAITVINLHVRSSANHPEAAITFSGGDDFSHSPTTDANSGKLVMFSGDPDFSTGAHALLNKDCELGRGGFGAVYQTVLRDGHPVAIKKLTVSSLVKSQEEFEREVKKLGKVRHQNLVALEGYYWTPSLQLLIYEFVSGGSLYKQLHEGLGGNTISWNERFNIILGTAKSLAHLHQMNIIHYNIKSSNVLIDSSGEPKVGDFGLARLLPMLDRYVLSSKIQSALGYMAPEFACKTVKITEKCDVYGFGVLVLEVVTGKRPVEYMEDDVVVLCDMVRRALEEGRVEECIDGRLQRNFPSEEAIPVVKLGLICTSQVPSNRPDMAEVVNILELIRCPSEGQEELG 964
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3236746 3240643 + Lsi03G002610.1 Lsi03g00261 658011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00261 964 ProSitePatterns Protein kinases ATP-binding region signature. 687 710 IPR017441 GO:0005524
Lsi03g00261 964 CDD STKc_IRAK 687 953 - -
Lsi03g00261 964 Pfam Leucine rich repeat 240 298 IPR001611 GO:0005515
Lsi03g00261 964 Pfam Leucine rich repeat 118 178 IPR001611 GO:0005515
Lsi03g00261 964 Pfam Leucine rich repeat 405 465 IPR001611 GO:0005515
Lsi03g00261 964 SUPERFAMILY Protein kinase-like (PK-like) 684 954 IPR011009 -
Lsi03g00261 964 Gene3D Transferase(Phosphotransferase) domain 1 758 962 - -
Lsi03g00261 964 PRINTS Leucine-rich repeat signature 192 205 - -
Lsi03g00261 964 PRINTS Leucine-rich repeat signature 380 393 - -
Lsi03g00261 964 Pfam Protein kinase domain 684 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g00261 964 Gene3D Ribonuclease Inhibitor 286 573 IPR032675 -
Lsi03g00261 964 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 2 955 - -
Lsi03g00261 964 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE IRK-RELATED 2 955 - -
Lsi03g00261 964 SUPERFAMILY RNI-like 99 515 - -
Lsi03g00261 964 Gene3D Phosphorylase Kinase; domain 1 675 757 - -
Lsi03g00261 964 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Lsi03g00261 964 Gene3D Ribonuclease Inhibitor 184 281 IPR032675 -
Lsi03g00261 964 ProSiteProfiles Protein kinase domain profile. 681 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g00261 964 Gene3D Ribonuclease Inhibitor 26 183 IPR032675 -
Lsi03g00261 964 SMART LRR_typ_2 213 237 IPR003591 -
Lsi03g00261 964 SMART LRR_typ_2 285 308 IPR003591 -
Lsi03g00261 964 SMART LRR_typ_2 500 523 IPR003591 -
Lsi03g00261 964 SMART LRR_typ_2 380 404 IPR003591 -
Lsi03g00261 964 SMART LRR_typ_2 309 332 IPR003591 -
Lsi03g00261 964 SMART LRR_typ_2 116 140 IPR003591 -
Lsi03g00261 964 SMART LRR_typ_2 189 212 IPR003591 -
Lsi03g00261 964 SMART LRR_typ_2 428 452 IPR003591 -
Lsi03g00261 964 SMART LRR_typ_2 524 548 IPR003591 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi03g00261 Lsi04g01017 CCT
Lsi03g00261 Lsi04g01017 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00261 Lsi-Chr3:3236746 Lsi01g00619 Lsi-Chr1:4972022 4.50E-30 dispersed
Lsi08g00626 Lsi-Chr8:14603324 Lsi03g00261 Lsi-Chr3:3236746 4.62E-16 dispersed
Lsi02g00947 Lsi-Chr2:9436623 Lsi03g00261 Lsi-Chr3:3236746 2.13E-79 transposed
Lsi03g00148 Lsi-Chr3:2098372 Lsi03g00261 Lsi-Chr3:3236746 6.24E-15 transposed
Lsi03g00476 Lsi-Chr3:5413498 Lsi03g00261 Lsi-Chr3:3236746 7.95E-22 transposed
Lsi03g02285 Lsi-Chr3:33709382 Lsi03g00261 Lsi-Chr3:3236746 0 transposed
Lsi06g00440 Lsi-Chr6:4813427 Lsi03g00261 Lsi-Chr3:3236746 2.32E-34 transposed
Lsi07g00056 Lsi-Chr7:582004 Lsi03g00261 Lsi-Chr3:3236746 0 transposed
Lsi07g01362 Lsi-Chr7:19814734 Lsi03g00261 Lsi-Chr3:3236746 8.38E-172 transposed
Lsi09g00748 Lsi-Chr9:8577757 Lsi03g00261 Lsi-Chr3:3236746 1.19E-69 transposed
Lsi03g00261 Lsi-Chr3:3236746 Lsi04g01017 Lsi-Chr4:11513909 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83463 PF00069 Pkinase 1.90E-41 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00261 - - csv:101217024 1752.26