Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00266 ATGGCCCCCTCACCAATCTCTTCTCTTTCAATCTTCTTCCTTATTTTCCTTCCTGCAATCTCCGCCGATTACGGCCACGCCACCTTCTATGGCGGTGGAGACGCTTCCGGCACAATGGGTGGGGCTTGTGGGTATGGGAATTTGTACAGTCAAGGATATGGGACGAACACGGCGGCGCTTAGTACTGCTCTGTTCAACAATGGGCTGAGCTGTGGCTCTTGCTATGAAATCACTTGCAACAGTGATCCTAAATGGTGTCTTCCAGGAAAAATCATCGTCACTGCCACTAATTTCTGTCCACCAAACTTTGCTCTGTCCAACGACAATGGCGGCTGGTGCAACCCTCCTCTGCAACACTTCGATTTGGCTGAGCCGGCTTTTCTCCAAATCGCTCAGTACCGTGCTGGCATCGTTCCTGTCTCCTTCCAAAGAGTACCATGTATGAAGAAGGGAGGAATAAGATTCACCATAAACGGACATTCATACTTCAACTTGGTTCTGATCACCAACGTGGGTGGTGCCGGCGACGTCCACTCGGTGTCGATCAAAGGTTCGAAAACAGGATGGCAAGCCATGTCCAGAAATTGGGGACAGAATTGGCAGAGCAACAATTACTTGAACGGACAGTCTCTCTCTTTCCAAGTCACCACCAGCGACGGCCGTACCGTCACCAGCTACGACGCCGTTCCGGTCAACTGGCAGTTCGGCCAGACGTTCGAGGGAGGCCAATTCTAA 735 51.43 MAPSPISSLSIFFLIFLPAISADYGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEITCNSDPKWCLPGKIIVTATNFCPPNFALSNDNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFQRVPCMKKGGIRFTINGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNNYLNGQSLSFQVTTSDGRTVTSYDAVPVNWQFGQTFEGGQF 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3285863 3287462 + Lsi03G002660.1 Lsi03g00266 658016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00266 244 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 152 IPR007112 -
Lsi03g00266 244 Gene3D - 151 244 IPR036749 -
Lsi03g00266 244 SUPERFAMILY Barwin-like endoglucanases 12 170 IPR036908 -
Lsi03g00266 244 SMART dpbb_1 57 142 IPR007112 -
Lsi03g00266 244 PRINTS Expansin signature 91 101 IPR002963 GO:0009664
Lsi03g00266 244 PRINTS Expansin signature 163 184 IPR002963 GO:0009664
Lsi03g00266 244 PRINTS Expansin signature 52 66 IPR002963 GO:0009664
Lsi03g00266 244 PRINTS Expansin signature 79 90 IPR002963 GO:0009664
Lsi03g00266 244 PRINTS Expansin signature 198 219 IPR002963 GO:0009664
Lsi03g00266 244 PRINTS Expansin signature 227 243 IPR002963 GO:0009664
Lsi03g00266 244 PRINTS Expansin signature 127 140 IPR002963 GO:0009664
Lsi03g00266 244 PRINTS Expansin signature 110 127 IPR002963 GO:0009664
Lsi03g00266 244 PRINTS Expansin signature 151 163 IPR002963 GO:0009664
Lsi03g00266 244 PANTHER EXPANSIN 23 244 - -
Lsi03g00266 244 SUPERFAMILY PHL pollen allergen 149 241 IPR036749 -
Lsi03g00266 244 Pfam Expansin C-terminal domain 153 230 IPR007117 -
Lsi03g00266 244 PANTHER EXPANSIN-A15 23 244 IPR002963 GO:0009664
Lsi03g00266 244 Gene3D - 19 148 IPR036908 -
Lsi03g00266 244 PRINTS Expansin/Lol pI family signature 21 36 IPR007118 GO:0005576
Lsi03g00266 244 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576
Lsi03g00266 244 PRINTS Expansin/Lol pI family signature 189 203 IPR007118 GO:0005576
Lsi03g00266 244 PRINTS Expansin/Lol pI family signature 135 151 IPR007118 GO:0005576
Lsi03g00266 244 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576
Lsi03g00266 244 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576
Lsi03g00266 244 Pfam Lytic transglycolase 57 142 IPR009009 -
Lsi03g00266 244 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 162 241 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01430 Lsi-Chr1:12459638 Lsi03g00266 Lsi-Chr3:3285863 1.15E-46 dispersed
Lsi03g00266 Lsi-Chr3:3285863 Lsi04g00406 Lsi-Chr4:3973635 2.05E-141 dispersed
Lsi03g00266 Lsi-Chr3:3285863 Lsi04g01024 Lsi-Chr4:11657775 1.22E-80 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00266 - K20628 csv:101217496 489.189