Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi03g00275 | ATGTCAAGAGAAAGAGAATTACAAGAGGTGGATGAGACCGGGAAGAAAATAAAGAGGGAAATTGATCAAGGTTTTTATGATTCTCCATTAATGGGAAGAAGGCACATTTTAAGTCCAAATGGGACTTTGAATACAATAACGCCATGTGCAGCTTGTAAGCTTTTAAGAAGAAGGTGTGCTCAAGAATGTCCATTTTCTCCTTATTTTTCTCCACATGAACCTCACAAATTTGCTTCGGTTCATAAAGTTTTTGGTGCAAGCAACGTCGCTAAGATGCTCATGGAGGTACCGGAGAGTCAAAGAGCGGACGCAGCAAACAGCCTCGTATATGAAGCCAATCTAAGGCTGAGAGATCCTGTGTACGGCTGCATGGGCGCCATTTCTGCTCTTCAACACCAACTTCAAACCTTACAATCTGACCTCAATGCCATCAGAACCCAGATTTTCAACTTCAAATTTACACATCATAATAATTCACACATTCCTAATTTCATTTCTGCCGCCGCAACGCCGCCTGCTGCCCCGCCCACTCCGCCACATTCTCAGCCGCCTCCGCTCTCTCTTCCGCCGCCTCTTCCTCCCTCCTCCTCCATCTTTTCCCCTCCCATTATCACTACTACTACCACTGCCCCTGAATTAATTAACCCTATCTCAACAACTCAACATATTTCCTACTTTGGTTAA | 684 | 44.59 | MSRERELQEVDETGKKIKREIDQGFYDSPLMGRRHILSPNGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVAKMLMEVPESQRADAANSLVYEANLRLRDPVYGCMGAISALQHQLQTLQSDLNAIRTQIFNFKFTHHNNSHIPNFISAAATPPAAPPTPPHSQPPPLSLPPPLPPSSSIFSPPIITTTTTAPELINPISTTQHISYFG | 227 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 3380756 | 3383615 | + | Lsi03G002750.1 | Lsi03g00275 | 658025 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi03g00275 | 227 | MobiDBLite | consensus disorder prediction | 169 | 192 | - | - | |
Lsi03g00275 | 227 | PANTHER | BNAA03G19070D PROTEIN | 29 | 227 | - | - | |
Lsi03g00275 | 227 | MobiDBLite | consensus disorder prediction | 165 | 192 | - | - | |
Lsi03g00275 | 227 | ProSiteProfiles | LOB domain profile. | 47 | 148 | IPR004883 | - | |
Lsi03g00275 | 227 | Pfam | Lateral organ boundaries (LOB) domain | 48 | 144 | IPR004883 | - | |
Lsi03g00275 | 227 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 29 | 227 | - | - | |
Lsi03g00275 | 227 | Coils | Coil | 127 | 147 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi03g00275 | Lsi-Chr3:3380756 | Lsi02g01015 | Lsi-Chr2:10457656 | 8.31E-47 | dispersed | |
Lsi10g01525 | Lsi-Chr10:19619135 | Lsi03g00275 | Lsi-Chr3:3380756 | 5.80E-41 | dispersed | |
Lsi10g00093 | Lsi-Chr10:1510738 | Lsi03g00275 | Lsi-Chr3:3380756 | 6.87E-20 | transposed | |
Lsi03g00275 | Lsi-Chr3:3380756 | Lsi04g01033 | Lsi-Chr4:12002599 | 1.20E-87 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24958 | PF03195 | LOB | 3.00E-40 | No_clan | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi03g00275 | - | - | csv:101214467 | 280.796 |