Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00275 ATGTCAAGAGAAAGAGAATTACAAGAGGTGGATGAGACCGGGAAGAAAATAAAGAGGGAAATTGATCAAGGTTTTTATGATTCTCCATTAATGGGAAGAAGGCACATTTTAAGTCCAAATGGGACTTTGAATACAATAACGCCATGTGCAGCTTGTAAGCTTTTAAGAAGAAGGTGTGCTCAAGAATGTCCATTTTCTCCTTATTTTTCTCCACATGAACCTCACAAATTTGCTTCGGTTCATAAAGTTTTTGGTGCAAGCAACGTCGCTAAGATGCTCATGGAGGTACCGGAGAGTCAAAGAGCGGACGCAGCAAACAGCCTCGTATATGAAGCCAATCTAAGGCTGAGAGATCCTGTGTACGGCTGCATGGGCGCCATTTCTGCTCTTCAACACCAACTTCAAACCTTACAATCTGACCTCAATGCCATCAGAACCCAGATTTTCAACTTCAAATTTACACATCATAATAATTCACACATTCCTAATTTCATTTCTGCCGCCGCAACGCCGCCTGCTGCCCCGCCCACTCCGCCACATTCTCAGCCGCCTCCGCTCTCTCTTCCGCCGCCTCTTCCTCCCTCCTCCTCCATCTTTTCCCCTCCCATTATCACTACTACTACCACTGCCCCTGAATTAATTAACCCTATCTCAACAACTCAACATATTTCCTACTTTGGTTAA 684 44.59 MSRERELQEVDETGKKIKREIDQGFYDSPLMGRRHILSPNGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVAKMLMEVPESQRADAANSLVYEANLRLRDPVYGCMGAISALQHQLQTLQSDLNAIRTQIFNFKFTHHNNSHIPNFISAAATPPAAPPTPPHSQPPPLSLPPPLPPSSSIFSPPIITTTTTAPELINPISTTQHISYFG 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3380756 3383615 + Lsi03G002750.1 Lsi03g00275 658025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00275 227 MobiDBLite consensus disorder prediction 169 192 - -
Lsi03g00275 227 PANTHER BNAA03G19070D PROTEIN 29 227 - -
Lsi03g00275 227 MobiDBLite consensus disorder prediction 165 192 - -
Lsi03g00275 227 ProSiteProfiles LOB domain profile. 47 148 IPR004883 -
Lsi03g00275 227 Pfam Lateral organ boundaries (LOB) domain 48 144 IPR004883 -
Lsi03g00275 227 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 29 227 - -
Lsi03g00275 227 Coils Coil 127 147 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00275 Lsi-Chr3:3380756 Lsi02g01015 Lsi-Chr2:10457656 8.31E-47 dispersed
Lsi10g01525 Lsi-Chr10:19619135 Lsi03g00275 Lsi-Chr3:3380756 5.80E-41 dispersed
Lsi10g00093 Lsi-Chr10:1510738 Lsi03g00275 Lsi-Chr3:3380756 6.87E-20 transposed
Lsi03g00275 Lsi-Chr3:3380756 Lsi04g01033 Lsi-Chr4:12002599 1.20E-87 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24958 PF03195 LOB 3.00E-40 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00275 - - csv:101214467 280.796