Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00276 ATGGCTGATTCAAGATTCAGAGGAGTTTTTATTTTGACTTTGGGTTTGTTTATGCTCTTTTTGGGCAATGTCTCAGCTCAACTCTCTACTGGTTTTTACTCTTCTTCTTGTCCAAATTTGTTGTCCACTGTCAAATCCTCTGTTCGATCTGCTGTTTCCAGTGAGGCTCGAATGGGAGCTTCCATTCTTCGCTTGTTTTTTCATGACTGTTTCGTCAATGGATGCGACGGGTCGATTTTGTTAGACGACACGTCGAGCTTTACTGGAGAGAAAAATGCAAATCCCAATAGAAACTCTGCTAGAGGCTTTGATGTCATTGATAACATCAAAACCGCTGTCGAAAAAGCTTGTCCTGGCGTCGTTTCTTGTGCTGATATTCTTGCTATTGCTGCTCGTGACTCTGTCGTTCTCGTAAGCGGGCACACGATCGGACAAGCGCGGTGCACAACATTTAGAGGCAGAATATACAGCAATAGCACAATTGAGAGTTCATTTGCAAGAACAAGGCAAAGCAATTGCCCCAATACCTCAGGAACTGGAGACAACAATTTGGCTCCTTTGGATTTGCAAACTCCAAATTCATTTGACAACAACTACTACAAGAATCTTCTTCAGAACAAGGGCCTTCTTCAATCTGATCAAGTTCTCTTCAATGGTGGATCTACAGACTCCACTGTTCAAAATTATGCAAATGCCCCTGCCCGTTTCTTCTCTGATTTTGCTGCTGCCATGGTCAAGATGGGGGATATCAGTCCTCTTACTGGCTCCAATGGTGAAATTAGGAAGAACTGCAGGAGTGTTAATTAA 807 43.0 MADSRFRGVFILTLGLFMLFLGNVSAQLSTGFYSSSCPNLLSTVKSSVRSAVSSEARMGASILRLFFHDCFVNGCDGSILLDDTSSFTGEKNANPNRNSARGFDVIDNIKTAVEKACPGVVSCADILAIAARDSVVLVSGHTIGQARCTTFRGRIYSNSTIESSFARTRQSNCPNTSGTGDNNLAPLDLQTPNSFDNNYYKNLLQNKGLLQSDQVLFNGGSTDSTVQNYANAPARFFSDFAAAMVKMGDISPLTGSNGEIRKNCRSVN 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3387980 3389568 - Lsi03G002760.1 Lsi03g00276 658026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00276 268 ProSiteProfiles Plant heme peroxidase family profile. 27 268 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g00276 268 SUPERFAMILY Heme-dependent peroxidases 27 268 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lsi03g00276 268 Pfam Peroxidase 44 137 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g00276 268 Gene3D Peroxidase, domain 2 137 247 - -
Lsi03g00276 268 CDD secretory_peroxidase 27 267 IPR033905 GO:0004601|GO:0042744
Lsi03g00276 268 ProSitePatterns Peroxidases active site signature. 59 70 IPR019794 GO:0004601
Lsi03g00276 268 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00276 268 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00276 268 PRINTS Plant peroxidase signature 61 81 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00276 268 PRINTS Plant peroxidase signature 37 56 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00276 268 Gene3D - 32 136 - -
Lsi03g00276 268 PANTHER PEROXIDASE 72-RELATED 137 268 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00276 268 PANTHER PEROXIDASE 72-RELATED 11 140 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00276 268 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g00276 268 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g00276 268 PRINTS Haem peroxidase superfamily signature 188 203 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g00276 268 PANTHER PEROXIDASE 137 268 - -
Lsi03g00276 268 PANTHER PEROXIDASE 11 140 - -
Lsi03g00276 268 Gene3D - 248 268 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01227 Lsi-Chr2:16095810 Lsi03g00276 Lsi-Chr3:3387980 5.77E-106 dispersed
Lsi03g00276 Lsi-Chr3:3387980 Lsi10g01472 Lsi-Chr10:18858744 4.20E-106 dispersed
Lsi04g00321 Lsi-Chr4:3287127 Lsi03g00276 Lsi-Chr3:3387980 2.36E-23 dispersed
Lsi03g00276 Lsi-Chr3:3387980 Lsi01g00995 Lsi-Chr1:8224675 2.62E-85 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00276 K00430 - csv:101218447 430.639