Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lsi03g00291	ATGGTCGAGAAAATGGTTCTCAATGATCAATATTCTGATGCAATTTCTTTACCTACCAATTCGATCAGGAAGAGGAAGTCACGGAGTAGACGGGATCGATCGACCGTGGCTGAGACTCTTGCTAAGTGGAAAGCTTATAACGAATGTTTTGATTCTTATAATGATGGAGGCAAGCCAACTCGTAAAGCTCCAGCAAAAGGGTCTAAGAAGGGATGTATGAAAGGTAAAGGAGGACCCTTAAATTCACATTGCAATTACAGAGGTGTGAGGCAGAGGACATGGGGCAAATGGGTTGCAGAGATTCGTGAACCCAACAGAGGGAGTAGGCTGTGGCTTGGTACTTTCCCCACTGCCATTGAAGCCGCTCTCGCCTACGACGAGGCTGCGAGGACGATGTATGGTCAAAGTGCTCGTTTAAACCTTCCCAAGATAAAAAACAGAGGGCAACTACAGGGGATTCTTTTGGAAGATTACTTGGGACTGCGTAACTCAGATTCTTCAACTGCTACTTCGACATGTTCTGAATCTATGACTACGACGTCGAACCAATCTGAGGTCTGCGTGCCCGAGGAGTTCGCAATGAGGCCACAACTTGTGCCCTCAAACATTAAGATTGAAGATGGGGAAGGTGAATCGAGGACCCGGGATCATGGTGATGACACTGCGACGCCGATGTGCTTAGAGAATCAAGTGAAACATGAGGATTGCCATGATCGGGCAGCTGTATTAGGGACTGAGTTTCCTAGTTTGGATCAGTTGCAGAGCTTTCAAATGGATGAAATGTTCAAGCCGAGGACCGGGAATCAGGCTGATCATCTGGCAATGCCAATGAGCTTAGAGAAGCAAGTGAAGGATGAAGATCTCGATGCTGTATATCGTGATCGGAGCAATGATCAAGCTGTCTTGTCAGAAGCTTGGATCTCTAGTCTAAATGATTTACCAAACTTTCAAATGGATGAAATGTTTGATGTGGAAGAGCTTCTAAGCCTGATAAGTAGTGACTACTCGTATGATCCAACAAGCATCTTGAAGGGCAATGCAGATGGCTATACTAACATGGCACCTTCACAAGTTAGCAATCTTGGGTCTGAGAAGCCGTCAAGTTGGTCATACCAATTCCAAAATCCCGATGCGAAGCTGCTCGGAAGTCTCCAACAGACGGAGCAAGCTTCGGCTGATGTCGACTACGGATTTGATTTCTTGAAGCAGGGGAGGGAGGAGGATCTGAATGCGGCAGCAGATGATTGTGTTAGATACCTGAACGAGATGGGTGATTTAGGTTTTTGA	1287	46.23	MVEKMVLNDQYSDAISLPTNSIRKRKSRSRRDRSTVAETLAKWKAYNECFDSYNDGGKPTRKAPAKGSKKGCMKGKGGPLNSHCNYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPTAIEAALAYDEAARTMYGQSARLNLPKIKNRGQLQGILLEDYLGLRNSDSSTATSTCSESMTTTSNQSEVCVPEEFAMRPQLVPSNIKIEDGEGESRTRDHGDDTATPMCLENQVKHEDCHDRAAVLGTEFPSLDQLQSFQMDEMFKPRTGNQADHLAMPMSLEKQVKDEDLDAVYRDRSNDQAVLSEAWISSLNDLPNFQMDEMFDVEELLSLISSDYSYDPTSILKGNADGYTNMAPSQVSNLGSEKPSSWSYQFQNPDAKLLGSLQQTEQASADVDYGFDFLKQGREEDLNAAADDCVRYLNEMGDLGF	428

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
3	3529309	3530595	+	Lsi03G002910.1	Lsi03g00291	658041

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lsi03g00291	428	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C	20	336	-	-
	Lsi03g00291	428	SUPERFAMILY	DNA-binding domain	85	142	IPR016177	GO:0003677
	Lsi03g00291	428	MobiDBLite	consensus disorder prediction	57	77	-	-
	Lsi03g00291	428	CDD	AP2	84	142	IPR001471	GO:0003700\|GO:0006355
	Lsi03g00291	428	Pfam	AP2 domain	84	134	IPR001471	GO:0003700\|GO:0006355
	Lsi03g00291	428	PRINTS	Ethylene responsive element binding protein signature	108	124	IPR001471	GO:0003700\|GO:0006355
	Lsi03g00291	428	PRINTS	Ethylene responsive element binding protein signature	86	97	IPR001471	GO:0003700\|GO:0006355
	Lsi03g00291	428	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C	20	336	-	-
	Lsi03g00291	428	ProSiteProfiles	AP2/ERF domain profile.	85	142	IPR001471	GO:0003700\|GO:0006355
	Lsi03g00291	428	Gene3D	AP2/ERF domain	85	143	IPR036955	GO:0003700\|GO:0006355
	Lsi03g00291	428	SMART	rav1_2	85	148	IPR001471	GO:0003700\|GO:0006355

Event-related genes

Select	Gene_1	Gene_2	Event_name
	Lsi03g00291	Lsi04g01058	CCT

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Lsi03g00291	Lsi-Chr3:3529309	Lsi08g01358	Lsi-Chr8:21900887	3.02E-35	dispersed
	Lsi01g01580	Lsi-Chr1:13999060	Lsi03g00291	Lsi-Chr3:3529309	1.85E-31	wgd

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	24960	PF00847	AP2	1.10E-14	CL0081	Lsi	TF

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lsi03g00291	-		K09286	csv:101215431	640.188