Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00297 ATGAGAGCCTGCAAATTGCTGAAAAGAAGATGCACTCCCACTTGCATATTTGCCCCTTATTTTAGGTCTGATGAGCCAAAGAAATTTGCCAAAGTTCATAAGGTTTTTGGGGCAAGTAACGTGAGCAAGATTCTGACTGAGGTTCCTGAGGAGCAGAGAGAGGACACTGTCAATTCTTTGGCTTATGAAGCTGAGGCCAGGCTGAGGGACCCTGTTTACGGCTGCATCGGTGCCATAGCTTTGTTGCAGACTAAAATGGTGGAGCTTCAACATGATCTTGCCCTTGCCAAAGCTCGTCTTGCTCGTTATGCTAATAATTCTCATCATAATCATAATACTTCTTCTTTAGAAAATTGTGTTGTTAATATGTCTTATGGTGGATTGAGTTTCTCTGCAGGGCAGAGCTCTTCTGATATCACCCAATATGGATATTTATGTGACTTCACCCATTTTCCTTATCCATTTAAAGCTTGA 474 41.98 MRACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLALAKARLARYANNSHHNHNTSSLENCVVNMSYGGLSFSAGQSSSDITQYGYLCDFTHFPYPFKA 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3602061 3603057 + Lsi03G002970.1 Lsi03g00297 658047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00297 157 Pfam Lateral organ boundaries (LOB) domain 3 97 IPR004883 -
Lsi03g00297 157 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 130 - -
Lsi03g00297 157 Coils Coil 79 106 - -
Lsi03g00297 157 ProSiteProfiles LOB domain profile. 1 100 IPR004883 -
Lsi03g00297 157 PANTHER LOB DOMAIN-CONTAINING PROTEIN 21 3 130 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00297 Lsi-Chr3:3602061 Lsi03g01359 Lsi-Chr3:24507575 7.75E-47 dispersed
Lsi03g00297 Lsi-Chr3:3602061 Lsi04g01066 Lsi-Chr4:12673905 4.06E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24961 PF03195 LOB 5.80E-37 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00297 - - csv:101222226 275.789