Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00318 ATGGCAACGACCGAGAACACAGTTTTGCAATTTTCACAGTCTTCTAACACTTTATCTGCGAAGGTTCATCCCCTGGTTATCTTCAACATTTGTGATTGCTATGTGAGGCGCCCGGACCAGGCCGATCGAGTGATTGGTACTCTTCTCGGCTCGGTTTTACCTGATGGAACCGTTGATATTCATAACTCTTATGCTGTTCCTCATAATGAGTTCTCGGATCAGGTTGCGCTGGATATTGACTATCATCACAATATGTTAAGTTCCCACCAAAAAGTTAATCCAAAGGAAGTTATCGTTGGATGGTACTCAACTGGTACGGGAGTTACAGGTGGCAGTGCATTGATACACGAATTTTATTCAAGAGAAGTTGCAAACCCTATTCACCTGACTGTTGATACTGGATTTAAAAATGGTGAAGGGACGATAAAAGCCTATATCTCTGTCAATTTGTCCCTGGGAGATAGACAACTTGCTGCTCAGTTTCAAGAAATTCCTTTAGATCTTCGGATGGTTGAAGCTGAGAGACTTGGATTTGATATACTGAAGACAACGTCTGTTGATAAACTGCCAAATGATTTGGAAGGAATGGAAGCTTCAATGGAGAGATTGCTTGCCTTAATTGACGATATTTACAAATATGTTGATAACGTTGTGGAAGGGCACGTTGAGGCAGACAACACGATAGGGAGATTTTTAGCTGACACTGTAGCCTCTCTTCCAAAACTGTCGCCAGCTGCTTTTGATAAGCTGATGAACGACAACGTGCAGGACCATTTGCTGTTGCTGTATTTGTCAAGTATCACCCGGACACAGTTGAGCTTGGCTGAAAAGTTGAATACGGCTGCTCAGATTCTGTAA 858 42.54 MATTENTVLQFSQSSNTLSAKVHPLVIFNICDCYVRRPDQADRVIGTLLGSVLPDGTVDIHNSYAVPHNEFSDQVALDIDYHHNMLSSHQKVNPKEVIVGWYSTGTGVTGGSALIHEFYSREVANPIHLTVDTGFKNGEGTIKAYISVNLSLGDRQLAAQFQEIPLDLRMVEAERLGFDILKTTSVDKLPNDLEGMEASMERLLALIDDIYKYVDNVVEGHVEADNTIGRFLADTVASLPKLSPAAFDKLMNDNVQDHLLLLYLSSITRTQLSLAEKLNTAAQIL 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3850690 3854873 + Lsi03G003180.1 Lsi03g00318 658068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00318 285 Gene3D Cytidine Deaminase, domain 2 7 186 - -
Lsi03g00318 285 SMART pad1_6 19 150 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lsi03g00318 285 Pfam Maintenance of mitochondrial structure and function 172 278 IPR024969 -
Lsi03g00318 285 CDD MPN_eIF3f 21 278 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lsi03g00318 285 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 18 121 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lsi03g00318 285 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 17 284 - -
Lsi03g00318 285 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F 17 284 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lsi03g00318 285 ProSiteProfiles MPN domain profile. 20 151 IPR037518 -
Lsi03g00318 285 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 18 281 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01780 Lsi-Chr2:23564658 Lsi03g00318 Lsi-Chr3:3850690 3.63E-10 dispersed
Lsi03g00318 Lsi-Chr3:3850690 Lsi03g02184 Lsi-Chr3:32912881 8.91E-24 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00318 K03249 - csv:101205957 556.214