Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi03g00338 | ATGACGACGATCCAAAACTCCCACGTTGTCGCAATGGATGTACAACGACAACAAGAACAAGAACGGCCTTGCCGGGTTTCTGCCGCTGGCAATGACTCCTCACCGGCCTCCGATGATGTGCGCCGGTGCTCGGCGCAGTCCAGGGCTGACATTCTGGAGGAGGCAGCGGCGGAGAAAAGAAGGGCATCCTCTGTGTCGGAGTGCTCTGTAAAGATGGATCTGGAATGTGGGTTGGCTGAGATTAAGGTACATTTGGCGAAAATCGAGAGGGATTGCCGGATTTGTCATCTGAGTTTGGATGCTTCTAATCACGAATCTGGAATCCCCATTGAGTTGGGTTGTTCTTGTAAGGATGATTTGGCTGCTGCTCATAAGCAGTGTGCTGAGGCTTGGTTCAAGATTAAGGGCGACATCACATGTGAGATCTGTGGATCAATTGCACACAATGTTACTGGTACTTACGAAGCCGATTCGACAGAGCAGCGCAATGAGTCAAACGAAGCAACAACAGCAACCGCTACAGCTGCTGTCGTGATGCCACCACACTCTACAGAGGCTCGGAACTTCTGGCAGGGTCACAGGTTCCTGAATTTCTTACTCGCCTGCATGGTTTTCGCCTTTGTCATATCATGGCTATTTCACTTCAAAATACCCTCATAA | 660 | 50.15 | MTTIQNSHVVAMDVQRQQEQERPCRVSAAGNDSSPASDDVRRCSAQSRADILEEAAAEKRRASSVSECSVKMDLECGLAEIKVHLAKIERDCRICHLSLDASNHESGIPIELGCSCKDDLAAAHKQCAEAWFKIKGDITCEICGSIAHNVTGTYEADSTEQRNESNEATTATATAAVVMPPHSTEARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS | 219 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 4021559 | 4024899 | + | Lsi03G003380.1 | Lsi03g00338 | 658088 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi03g00338 | 219 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - | |
| Lsi03g00338 | 219 | SMART | ringv_2 | 91 | 144 | IPR011016 | GO:0008270 | |
| Lsi03g00338 | 219 | PANTHER | ZINC FINGER, RING-CH-TYPE | 15 | 219 | - | - | |
| Lsi03g00338 | 219 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 84 | 150 | IPR011016 | GO:0008270 | |
| Lsi03g00338 | 219 | Pfam | RING-variant domain | 92 | 143 | IPR011016 | GO:0008270 | |
| Lsi03g00338 | 219 | PANTHER | OS01G0850200 PROTEIN | 15 | 219 | - | - | |
| Lsi03g00338 | 219 | SUPERFAMILY | RING/U-box | 89 | 146 | - | - | |
| Lsi03g00338 | 219 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 79 | 153 | IPR013083 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi03g00338 | Lsi-Chr3:4021559 | Lsi11g01724 | Lsi-Chr11:25314337 | 3.42E-27 | dispersed | |
| Lsi01g01995 | Lsi-Chr1:26713127 | Lsi03g00338 | Lsi-Chr3:4021559 | 1.61E-09 | transposed | |
| Lsi01g01511 | Lsi-Chr1:13172600 | Lsi03g00338 | Lsi-Chr3:4021559 | 3.18E-53 | wgd | |
| Lsi02g01315 | Lsi-Chr2:17603512 | Lsi03g00338 | Lsi-Chr3:4021559 | 3.27E-49 | wgd | |
| Lsi03g00338 | Lsi-Chr3:4021559 | Lsi03g02162 | Lsi-Chr3:32751721 | 5.54E-71 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi03g00338 | - | - | csv:101207404 | 351.288 |