Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00355 ATGGCATCCATTTCGAAACGGCTACTCCTCTTTGCAGCGGCGCTACTCGCCACCGTGGAAATCGCAACCTCCGTCACCCGATGTCCGGACTGCGGCGGTGCTTCCGTCCCCTATCCTCTGAGTACAAGCCCCACATGTGGAGACCAATCGTACAAGATCCGGTGCGACGCAGGCTCACTGAAATTCGACACGCTAAACAACACGTACCCGATCATCTCGATCAACCCGTCGATCCAACGGCTGGTGATCCAGCCCTCAAATTTCCTCCCGAACACGTGCGTGACAACGGATATCGCCCACGACGGAATCAAACTGAACAGTAGTTTACCCTTCAACGTTACGAGTGGGAACACGATCCTGTACTTCAACTGTTCAGATTCGCTTCTGCGCTCGCCGTTGAACTGCTCGTCGACGAGTCTGTGCCATTCGTACATCAACGGGTCAAGAGGAGTGGCGGCGTGCGAGGCGGCGCCGCTGTGCTGCACGTTTCGGGCAGGTGGGTCGTCGAATTCGTACATGATTCGGGTAAGGGAATCGGGGTGTAGCGCGTACACGAGCTTTGTGAACTTGAACCCGAGTTTGGGAGTGGTTCAGTGGCCTGAACCCGGGTTGGAGCTGCAGTGGCTTTTGCCGAGGGAGCCGGTTTGTAATACGCAGGCTGATTGTGGTGGGAACGCGGTTTGTGGTGTTGACCCGAGTGGGACGGCGATGAGACGCTGTCTTTGTAATTCTGGGTTTGTGTGGGACCCTGTTGCTGGAATCTGCTCTCAAAATACGTGTCATGATCCTGATGGTTGCAGTAATCACCGAACTGCACTGATAGCTGGCATTGTATCCGGCGTGGGCGCGGCGGTGATCATCTCAACAATAGCCATGCTAATGTACAATCGGCATAGAAGAGCGAAGGAAGCTCAAGATCGTTTAACAAAGGAGCGTGAAGCCATTCTGAATTCCAACGGTGGAGGCGGAAGGGCGGCAAAGATCTTCACCGGCAAAGAGATCAAGCGGGCCACACACAACTTCTCCGCCGACCGCCTTCTGGGTGCCGGCGGCTATGGCGAGGTCTATAAAGGCGTTCTTGGGGACGGAACCACCGTGGCCGTAAAGTGCGCCAAGCTTGGAAACGCGAAAGGCACCGACCAAGTTCTGAATGAGGTCCGAATCCTGTGCCAAGTTAACCACCGGAGTCTTGTCCGGCTCCTTGGCTGCTGCGTTGAACTAGAACAGCCAATTTTGGTGTACGAGTATATCCCCAACGGCACTCTTCTCGACCATTTACAAGGTATTAAAGAGACAAGGCCATTATCATGGGAGGAACGGCTCCGAATCGCGCAGGGCACAGCAGAGGGATTAGCATATCTTCATTTCTCAGCAGTTCCACCCATCTACCATCGAGACGTCAAATCCAGCAACATCCTCTTAGACCACAAGCTAATCCCCAAAGTTTCAGATTTCGGGCTCTCTCGCTTGGCAGAAACAGATCTAAGCCACATCTCAACTTGCGCCCAAGGAACTCTGGGCTACTTGGACCCCGAGTACTATCGGAACTACCAACTGACGGACAAGAGCGATGTGTACAGCTTTGGAGTGGTTCTGCTTGAGCTGTTGACATCGCAGAAGGCCATCGACTTCAGTCGGGATGCTGACGATGTCAACTTGGCGGTTTATGTCCAGCAGTTGGTGGAGGAAGAGAGATTGGTGGATGCTATTGATCCGAGGCTGAAGAAGGGAGCCACTGATGTTGAGATTGATACAATGAAGGCTTTGGGGTTTCTTGCAGTAGGTTGCTTGGAACAAAGAAGGCAGAATCGACCTTCTATGAAAGAAGTGGTGGAGGAGATTCAGTACATCATTAGCGTCGTTGTTGCTAAGGCTTAA 1878 53.09 MASISKRLLLFAAALLATVEIATSVTRCPDCGGASVPYPLSTSPTCGDQSYKIRCDAGSLKFDTLNNTYPIISINPSIQRLVIQPSNFLPNTCVTTDIAHDGIKLNSSLPFNVTSGNTILYFNCSDSLLRSPLNCSSTSLCHSYINGSRGVAACEAAPLCCTFRAGGSSNSYMIRVRESGCSAYTSFVNLNPSLGVVQWPEPGLELQWLLPREPVCNTQADCGGNAVCGVDPSGTAMRRCLCNSGFVWDPVAGICSQNTCHDPDGCSNHRTALIAGIVSGVGAAVIISTIAMLMYNRHRRAKEAQDRLTKEREAILNSNGGGGRAAKIFTGKEIKRATHNFSADRLLGAGGYGEVYKGVLGDGTTVAVKCAKLGNAKGTDQVLNEVRILCQVNHRSLVRLLGCCVELEQPILVYEYIPNGTLLDHLQGIKETRPLSWEERLRIAQGTAEGLAYLHFSAVPPIYHRDVKSSNILLDHKLIPKVSDFGLSRLAETDLSHISTCAQGTLGYLDPEYYRNYQLTDKSDVYSFGVVLLELLTSQKAIDFSRDADDVNLAVYVQQLVEEERLVDAIDPRLKKGATDVEIDTMKALGFLAVGCLEQRRQNRPSMKEVVEEIQYIISVVVAKA 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4205094 4210815 - Lsi03G003550.1 Lsi03g00355 658105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00355 625 ProSiteProfiles Protein kinase domain profile. 341 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g00355 625 Gene3D Transferase(Phosphotransferase) domain 1 417 622 - -
Lsi03g00355 625 SMART serkin_6 341 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g00355 625 PANTHER OS05G0318100 PROTEIN 17 622 - -
Lsi03g00355 625 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 17 622 IPR045274 GO:0007166
Lsi03g00355 625 ProSitePatterns Protein kinases ATP-binding region signature. 347 369 IPR017441 GO:0005524
Lsi03g00355 625 CDD STKc_IRAK 347 615 - -
Lsi03g00355 625 SUPERFAMILY Protein kinase-like (PK-like) 327 613 IPR011009 -
Lsi03g00355 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Lsi03g00355 625 Gene3D Phosphorylase Kinase; domain 1 317 416 - -
Lsi03g00355 625 Pfam Protein kinase domain 343 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01032 Lsi-Chr1:8536655 Lsi03g00355 Lsi-Chr3:4205094 7.63E-92 dispersed
Lsi02g00574 Lsi-Chr2:5138407 Lsi03g00355 Lsi-Chr3:4205094 4.18E-09 dispersed
Lsi03g00355 Lsi-Chr3:4205094 Lsi03g01956 Lsi-Chr3:30959868 0 dispersed
Lsi06g00728 Lsi-Chr6:12373736 Lsi03g00355 Lsi-Chr3:4205094 3.49E-53 dispersed
Lsi10g01414 Lsi-Chr10:18229898 Lsi03g00355 Lsi-Chr3:4205094 7.95E-68 dispersed
Lsi11g00611 Lsi-Chr11:6513770 Lsi03g00355 Lsi-Chr3:4205094 3.19E-42 dispersed
Lsi03g00355 Lsi-Chr3:4205094 Lsi01g01453 Lsi-Chr1:12657490 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83467 PF00069 Pkinase 5.20E-45 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00355 - - csv:101220186 1151.73